miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 18520 0.69 0.574021
Target:  5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3'
miRNA:   3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5'
26488 5' -52.6 NC_005357.1 + 16797 0.69 0.596843
Target:  5'- ---cGCCGagguggacGCGCUGCUGGCGAccgcGCCGCc -3'
miRNA:   3'- gaaaCGGC--------CGUGAUGGUUGUU----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 22226 0.75 0.294595
Target:  5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3'
miRNA:   3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17799 0.74 0.340161
Target:  5'- ---cGCCGGCAC-GCCAugugguucgACGuGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGaUGGU---------UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18161 0.73 0.394406
Target:  5'- --cUGuCCGGCGCcacGCUcaagguGGCAAGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGa--UGG------UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 25794 0.72 0.410761
Target:  5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3'
miRNA:   3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 30652 0.71 0.464334
Target:  5'- ---gGUCGGCACcauucUGCCGGCAAauccGCUGCa -3'
miRNA:   3'- gaaaCGGCCGUG-----AUGGUUGUU----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8988 0.71 0.474849
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 28284 0.7 0.529072
Target:  5'- ---cGCUGGaACgGCCGgaagGCAAGCCGCu -3'
miRNA:   3'- gaaaCGGCCgUGaUGGU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9908 0.7 0.551407
Target:  5'- ---gGCCGGCAUcACCAGCcugcacGGgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUUGu-----UCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 9224 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9080 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31309 0.69 0.619795
Target:  5'- --cUGCUcGCACguuugaACCAAUuGGCCGCa -3'
miRNA:   3'- gaaACGGcCGUGa-----UGGUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16670 0.69 0.619795
Target:  5'- -gUUGCCGccgcccagcaGCGCgcCCAGCGugcuGCCGCc -3'
miRNA:   3'- gaAACGGC----------CGUGauGGUUGUu---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 35342 0.68 0.642794
Target:  5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3'
miRNA:   3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26168 0.68 0.662314
Target:  5'- ---gGCCGcGCGCgagGCCAACGccauccgccauaucGuGCCGCu -3'
miRNA:   3'- gaaaCGGC-CGUGa--UGGUUGU--------------U-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37510 0.68 0.665751
Target:  5'- ---cGCgGGCaucGCUGCCGACGuuuccaccguGGCCGa -3'
miRNA:   3'- gaaaCGgCCG---UGAUGGUUGU----------UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 17870 0.68 0.677184
Target:  5'- ---gGCCGGC-CUcGCCAuc--GCCGCg -3'
miRNA:   3'- gaaaCGGCCGuGA-UGGUuguuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13536 0.67 0.68857
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 8295 0.67 0.699897
Target:  5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3'
miRNA:   3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.