miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 5455 0.68 0.665751
Target:  5'- ---gGUCGGUAUcgACCAuCAcGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-UGGUuGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 7707 0.68 0.677184
Target:  5'- ---gGCCGGC-UUGCCGAUGAaCUGCa -3'
miRNA:   3'- gaaaCGGCCGuGAUGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21235 0.67 0.68857
Target:  5'- ---aGCaacGCGCagACCAgcaGCAGGCCGCg -3'
miRNA:   3'- gaaaCGgc-CGUGa-UGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13536 0.67 0.68857
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 40290 0.67 0.68857
Target:  5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3'
miRNA:   3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9032 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9080 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16497 0.69 0.608308
Target:  5'- ---aGCgCGGCgacauGCUggGCCAccGCAAGCUGCa -3'
miRNA:   3'- gaaaCG-GCCG-----UGA--UGGU--UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37360 0.69 0.595698
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23393 0.69 0.562684
Target:  5'- ---cGCCGGCggccGCUACCAggGCua-CCGCa -3'
miRNA:   3'- gaaaCGGCCG----UGAUGGU--UGuucGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5122 0.67 0.726763
Target:  5'- ---gGCUGGCGCcguugaacugcaacgUGCCGcGCAGGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUG---------------AUGGU-UGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 19421 0.66 0.744356
Target:  5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 10355 0.66 0.744356
Target:  5'- --gUGuuGGCGggGCCGAUGAGCaugGCg -3'
miRNA:   3'- gaaACggCCGUgaUGGUUGUUCGg--CG- -5'
26488 5' -52.6 NC_005357.1 + 525 0.66 0.755193
Target:  5'- ---cGCUGGCcgaaUACCucggacgugcGCGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGug--AUGGu---------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 776 0.66 0.765894
Target:  5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3'
miRNA:   3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 33636 0.72 0.433545
Target:  5'- --cUGaCCGGCGCgGCCGACccaucgugcGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGaUGGUUGuu-------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 38170 0.72 0.443678
Target:  5'- --aUGCCGGCGCUgacgGCCGGCA--CCGa -3'
miRNA:   3'- gaaACGGCCGUGA----UGGUUGUucGGCg -5'
26488 5' -52.6 NC_005357.1 + 8988 0.71 0.474849
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4040 0.7 0.518028
Target:  5'- ---aGCCGGcCGCggcgAgCGGCAGGCCaGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa---UgGUUGUUCGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 29247 0.7 0.551407
Target:  5'- ---cGCCGGCcaagggcgcccaGCgcgGCCGACAcuGGCCGa -3'
miRNA:   3'- gaaaCGGCCG------------UGa--UGGUUGU--UCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.