miRNA display CGI


Results 101 - 120 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 18866 0.67 0.733395
Target:  5'- ---cGCCcGCAcCUGCCGGCGaugucGGCCGa -3'
miRNA:   3'- gaaaCGGcCGU-GAUGGUUGU-----UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 26312 0.67 0.722322
Target:  5'- ---cGUCGGgGCcACCGACGugcAGCCGg -3'
miRNA:   3'- gaaaCGGCCgUGaUGGUUGU---UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 1883 0.68 0.654284
Target:  5'- ---gGCCGGCGCUgGCCGGguGGgCGa -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUguUCgGCg -5'
26488 5' -52.6 NC_005357.1 + 14719 0.68 0.665751
Target:  5'- --aUGaCCGGCggcgagccGCUGCCGGCGcGCgGCc -3'
miRNA:   3'- gaaAC-GGCCG--------UGAUGGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 7035 0.68 0.677184
Target:  5'- --gUGCCGcCugUugCAGCAGG-CGCa -3'
miRNA:   3'- gaaACGGCcGugAugGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 12822 0.67 0.68857
Target:  5'- ---cGcCCGGCGCUggacaACUGGCAAaCCGCg -3'
miRNA:   3'- gaaaC-GGCCGUGA-----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 19631 0.67 0.699897
Target:  5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3'
miRNA:   3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 9032 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9176 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 36824 0.68 0.642794
Target:  5'- ---cGCCGugGCUACCAACGAGgCGg -3'
miRNA:   3'- gaaaCGGCcgUGAUGGUUGUUCgGCg -5'
26488 5' -52.6 NC_005357.1 + 9888 0.67 0.68857
Target:  5'- uCUcgGCCaGGCGCgugGCgAuguCGAGCUGCa -3'
miRNA:   3'- -GAaaCGG-CCGUGa--UGgUu--GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 730 0.68 0.677184
Target:  5'- ---gGgCGGCuuUGCCGACAAcGCCGg -3'
miRNA:   3'- gaaaCgGCCGugAUGGUUGUU-CGGCg -5'
26488 5' -52.6 NC_005357.1 + 8897 0.67 0.68857
Target:  5'- -aUUGUgaaUGGCGCUAUCGGC-GGCgCGCu -3'
miRNA:   3'- gaAACG---GCCGUGAUGGUUGuUCG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 19477 0.67 0.699897
Target:  5'- ---aGCUuGCGCcaggUGCCGguggGCAGGCCGCu -3'
miRNA:   3'- gaaaCGGcCGUG----AUGGU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 24646 0.68 0.676042
Target:  5'- --gUGCCGGCGg-GCCAggaugguguugucGCGcccGCCGCg -3'
miRNA:   3'- gaaACGGCCGUgaUGGU-------------UGUu--CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32818 0.7 0.529072
Target:  5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3'
miRNA:   3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 25309 0.7 0.529072
Target:  5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3'
miRNA:   3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8808 0.7 0.525749
Target:  5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3'
miRNA:   3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 608 0.68 0.677184
Target:  5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3'
miRNA:   3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 42199 0.67 0.68857
Target:  5'- ---cGCCGGCcCUA-CAACAuGCgGCa -3'
miRNA:   3'- gaaaCGGCCGuGAUgGUUGUuCGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.