miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 24383 0.66 0.762699
Target:  5'- ---cGCCGGUaaggcccccaagcaGCccGCCGACAAGaacCCGCa -3'
miRNA:   3'- gaaaCGGCCG--------------UGa-UGGUUGUUC---GGCG- -5'
26488 5' -52.6 NC_005357.1 + 15913 0.66 0.755193
Target:  5'- -cUUGCCGcUGCUGCUgaugaaccacacGAUAGGCUGCg -3'
miRNA:   3'- gaAACGGCcGUGAUGG------------UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 525 0.66 0.755193
Target:  5'- ---cGCUGGCcgaaUACCucggacgugcGCGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGug--AUGGu---------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 39565 0.66 0.755193
Target:  5'- -cUUGCaUGGCuCUGCCAACGcuacGGCUugGCg -3'
miRNA:   3'- gaAACG-GCCGuGAUGGUUGU----UCGG--CG- -5'
26488 5' -52.6 NC_005357.1 + 29133 0.66 0.755193
Target:  5'- ---cGCCGGCc---CCGGCGcGCUGCa -3'
miRNA:   3'- gaaaCGGCCGugauGGUUGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1181 0.66 0.754115
Target:  5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3'
miRNA:   3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27247 0.66 0.751956
Target:  5'- ---aGCCGGCGCcccaggcucuugGCCGagGCAAugaaccgcaguucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-----------UGGU--UGUU-------------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 10355 0.66 0.744356
Target:  5'- --gUGuuGGCGggGCCGAUGAGCaugGCg -3'
miRNA:   3'- gaaACggCCGUgaUGGUUGUUCGg--CG- -5'
26488 5' -52.6 NC_005357.1 + 19421 0.66 0.744356
Target:  5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 22156 0.66 0.744356
Target:  5'- --gUGCgGGCAacgacgGCCAACAgcagcaacAGCCGa -3'
miRNA:   3'- gaaACGgCCGUga----UGGUUGU--------UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 14930 0.66 0.744356
Target:  5'- ---aGCUGGCG--GCCGA--GGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgaUGGUUguUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29120 0.66 0.744356
Target:  5'- --cUGCCGGuCAC-GCgCGcgAGGCCGCa -3'
miRNA:   3'- gaaACGGCC-GUGaUG-GUugUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23691 0.66 0.743265
Target:  5'- ---gGCCGGaCACguacagGCCGGuagcgccCAGGUCGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa-----UGGUU-------GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 42047 0.67 0.733395
Target:  5'- ---cGCUGGCcgcGCUcaAUCGGCAGGCCaaGCa -3'
miRNA:   3'- gaaaCGGCCG---UGA--UGGUUGUUCGG--CG- -5'
26488 5' -52.6 NC_005357.1 + 14819 0.67 0.733395
Target:  5'- ---cGgCGGCGCUGCCuucgccCAGGUCGa -3'
miRNA:   3'- gaaaCgGCCGUGAUGGuu----GUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 11516 0.67 0.733395
Target:  5'- ---cGCCuGCGCUGgCGugAGGCCcuGCg -3'
miRNA:   3'- gaaaCGGcCGUGAUgGUugUUCGG--CG- -5'
26488 5' -52.6 NC_005357.1 + 18866 0.67 0.733395
Target:  5'- ---cGCCcGCAcCUGCCGGCGaugucGGCCGa -3'
miRNA:   3'- gaaaCGGcCGU-GAUGGUUGU-----UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 7653 0.67 0.733395
Target:  5'- ---cGCCGGCuccUUGCCGuacACGcGCCGUu -3'
miRNA:   3'- gaaaCGGCCGu--GAUGGU---UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37735 0.67 0.733395
Target:  5'- -cUUGCCGGCcauucucgccgcGCUAuCCGGCGcGCUGg -3'
miRNA:   3'- gaAACGGCCG------------UGAU-GGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 1804 0.67 0.733395
Target:  5'- aUUUGCUGGUACUGuuccaagucCCAcCAguGGCCGa -3'
miRNA:   3'- gAAACGGCCGUGAU---------GGUuGU--UCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.