miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 3' -56.2 NC_005357.1 + 34784 0.66 0.550466
Target:  5'- aGCaAUGUCgauucugcaaGGCCaAGGCCAcguguCCGGCGCu -3'
miRNA:   3'- cCGaUAUAG----------CCGG-UCUGGU-----GGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 2827 0.66 0.550466
Target:  5'- aGGUgcUcgCGGCCAcGCgCAgCGGCGCc -3'
miRNA:   3'- -CCGauAuaGCCGGUcUG-GUgGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 22202 0.67 0.539575
Target:  5'- aGGCacccaaGGCCAacagccGGCCGCgGGCGCu -3'
miRNA:   3'- -CCGauauagCCGGU------CUGGUGgCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 16094 0.67 0.539575
Target:  5'- cGGCg----CGGCCAGuuCGCgGuGCGCg -3'
miRNA:   3'- -CCGauauaGCCGGUCugGUGgC-CGUG- -5'
26489 3' -56.2 NC_005357.1 + 33860 0.67 0.539575
Target:  5'- cGUcGUGUCGcGCCuGucgcugcccGCCAUCGGCGCg -3'
miRNA:   3'- cCGaUAUAGC-CGGuC---------UGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 38159 0.67 0.539575
Target:  5'- cGGCcaucaccAUGcCGGCgCuGACgGCCGGCACc -3'
miRNA:   3'- -CCGa------UAUaGCCG-GuCUGgUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 11139 0.67 0.53849
Target:  5'- aGCagu-UCGGCCugcugcuGGGCCGCCuGCGCa -3'
miRNA:   3'- cCGauauAGCCGG-------UCUGGUGGcCGUG- -5'
26489 3' -56.2 NC_005357.1 + 41692 0.67 0.528757
Target:  5'- ---cGUGUCGGUCAu-CCGCCaGGCGCu -3'
miRNA:   3'- ccgaUAUAGCCGGUcuGGUGG-CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 9539 0.67 0.528757
Target:  5'- cGGCccuguUCGGCCAGugCgaucugcucGCCGGUg- -3'
miRNA:   3'- -CCGauau-AGCCGGUCugG---------UGGCCGug -5'
26489 3' -56.2 NC_005357.1 + 8278 0.67 0.507372
Target:  5'- cGGCUuccagGGCCAcGCUGCCGGgGCa -3'
miRNA:   3'- -CCGAuauagCCGGUcUGGUGGCCgUG- -5'
26489 3' -56.2 NC_005357.1 + 41731 0.67 0.507372
Target:  5'- gGGCgGUAUCuuGGgCGGcCCgGCCGGCGCc -3'
miRNA:   3'- -CCGaUAUAG--CCgGUCuGG-UGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 26721 0.67 0.507372
Target:  5'- uGC-GUAUUGcaaaGCCGGGCCACCGccaGCGCg -3'
miRNA:   3'- cCGaUAUAGC----CGGUCUGGUGGC---CGUG- -5'
26489 3' -56.2 NC_005357.1 + 16046 0.67 0.507372
Target:  5'- aGUUGUA--GGCCAGuucgcgcacgugGCCGCCGcGCGCg -3'
miRNA:   3'- cCGAUAUagCCGGUC------------UGGUGGC-CGUG- -5'
26489 3' -56.2 NC_005357.1 + 33402 0.67 0.507372
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCGc--- -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGGCcgug -5'
26489 3' -56.2 NC_005357.1 + 23554 0.67 0.496818
Target:  5'- uGGCc---UCGGCCGacAUCGCCGGCAg -3'
miRNA:   3'- -CCGauauAGCCGGUc-UGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 10350 0.67 0.496818
Target:  5'- cGGCcGUGUUGGCgGGGCCGauGaGCAUg -3'
miRNA:   3'- -CCGaUAUAGCCGgUCUGGUggC-CGUG- -5'
26489 3' -56.2 NC_005357.1 + 23274 0.67 0.486363
Target:  5'- aGGUcgGUGUCGGCguGcgccacgaauGCCuguuugcgGCCGGCACu -3'
miRNA:   3'- -CCGa-UAUAGCCGguC----------UGG--------UGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 18374 0.68 0.476014
Target:  5'- cGGCgagGUUGGCCuuGCCGauGGCGCc -3'
miRNA:   3'- -CCGauaUAGCCGGucUGGUggCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 14117 0.68 0.476014
Target:  5'- aGGUUAUcgccguacucGUCGGCCAGcggcuuGCCuuCCGGC-Cg -3'
miRNA:   3'- -CCGAUA----------UAGCCGGUC------UGGu-GGCCGuG- -5'
26489 3' -56.2 NC_005357.1 + 38881 0.68 0.465776
Target:  5'- cGGCgcgGUUGGCgGGACUGCgCGGUguGCg -3'
miRNA:   3'- -CCGauaUAGCCGgUCUGGUG-GCCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.