miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 5' -53.7 NC_005357.1 + 18846 0.67 0.692923
Target:  5'- uGACGGCcAUcGUCGCcccccGCCCGcACCUGc -3'
miRNA:   3'- cCUGCUGuUA-UAGCG-----CGGGC-UGGACa -5'
26489 5' -53.7 NC_005357.1 + 30985 0.66 0.724739
Target:  5'- --cUGcCGGUGUCGCGCCuuaucggCGACCUGc -3'
miRNA:   3'- ccuGCuGUUAUAGCGCGG-------GCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 14768 0.66 0.725823
Target:  5'- cGGugGAg---GUgGCGCCC-ACCUGg -3'
miRNA:   3'- -CCugCUguuaUAgCGCGGGcUGGACa -5'
26489 5' -53.7 NC_005357.1 + 18726 0.66 0.725823
Target:  5'- -cGCGACcugggCGCuaCCGGCCUGUa -3'
miRNA:   3'- ccUGCUGuuauaGCGcgGGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 2322 0.66 0.74729
Target:  5'- -aGCGACAGgcacagAUCGCGCagccuguccUCGAUCUGUu -3'
miRNA:   3'- ccUGCUGUUa-----UAGCGCG---------GGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 9563 0.66 0.757846
Target:  5'- gGGcGCGACAAUcUCG-GCgCCGACCg-- -3'
miRNA:   3'- -CC-UGCUGUUAuAGCgCG-GGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 17854 0.66 0.757846
Target:  5'- cGGACGGCccgacCGUGgCCGGCCUc- -3'
miRNA:   3'- -CCUGCUGuuauaGCGCgGGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 29403 0.68 0.603332
Target:  5'- cGAUGACGAggccGUCGCcacugcgcuGCgCGGCCUGUa -3'
miRNA:   3'- cCUGCUGUUa---UAGCG---------CGgGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 10098 0.69 0.592141
Target:  5'- uGGGCGGCGGuUGUCGgGaCgCCGGCCUu- -3'
miRNA:   3'- -CCUGCUGUU-AUAGCgC-G-GGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 25943 1 0.005442
Target:  5'- uGGACG-CAAUAUCGCGCCCGACCUGUc -3'
miRNA:   3'- -CCUGCuGUUAUAGCGCGGGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 13218 0.78 0.176898
Target:  5'- uGGACGcCAugcgCGCGUCCGACCUGc -3'
miRNA:   3'- -CCUGCuGUuauaGCGCGGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 34654 0.72 0.413467
Target:  5'- gGGugGACGccggcgcagAUCGCGCCgGugCUGc -3'
miRNA:   3'- -CCugCUGUua-------UAGCGCGGgCugGACa -5'
26489 5' -53.7 NC_005357.1 + 25164 0.72 0.423094
Target:  5'- uGGACGGCAAUAUC---CCCGGCUUGc -3'
miRNA:   3'- -CCUGCUGUUAUAGcgcGGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 4367 0.72 0.426983
Target:  5'- cGGACGGCAggcggAUgcgcagccaggcgccGUCGCGCCgGGCCUu- -3'
miRNA:   3'- -CCUGCUGU-----UA---------------UAGCGCGGgCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 15073 0.7 0.504591
Target:  5'- uGGACGagugcuGCGAgGUCG-GCCCGGCCUa- -3'
miRNA:   3'- -CCUGC------UGUUaUAGCgCGGGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 14724 0.69 0.565443
Target:  5'- cGGCGGCGAgccgcugccgGCGCgCGGCCUGUa -3'
miRNA:   3'- cCUGCUGUUauag------CGCGgGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 35260 0.69 0.580985
Target:  5'- aGGGCGuCAg---CGCGUCgGGCCUGg -3'
miRNA:   3'- -CCUGCuGUuauaGCGCGGgCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 28791 0.69 0.580985
Target:  5'- uGGACGGC-----CGCGCCgGACUUGc -3'
miRNA:   3'- -CCUGCUGuuauaGCGCGGgCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 12832 0.66 0.768269
Target:  5'- uGGACaacuGGCAAaccgcgcgccUGggCGCGgCCGACCUGa -3'
miRNA:   3'- -CCUG----CUGUU----------AUa-GCGCgGGCUGGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.