miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 5' -53.7 NC_005357.1 + 29403 0.68 0.603332
Target:  5'- cGAUGACGAggccGUCGCcacugcgcuGCgCGGCCUGUa -3'
miRNA:   3'- cCUGCUGUUa---UAGCG---------CGgGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 21461 0.69 0.592141
Target:  5'- gGGGCGGCAggAUGUUG-GCCuCGACCa-- -3'
miRNA:   3'- -CCUGCUGU--UAUAGCgCGG-GCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 10098 0.69 0.592141
Target:  5'- uGGGCGGCGGuUGUCGgGaCgCCGGCCUu- -3'
miRNA:   3'- -CCUGCUGUU-AUAGCgC-G-GGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 35260 0.69 0.580985
Target:  5'- aGGGCGuCAg---CGCGUCgGGCCUGg -3'
miRNA:   3'- -CCUGCuGUuauaGCGCGGgCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 28791 0.69 0.580985
Target:  5'- uGGACGGC-----CGCGCCgGACUUGc -3'
miRNA:   3'- -CCUGCUGuuauaGCGCGGgCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 16258 0.69 0.569874
Target:  5'- cGGAUGGCGuUGgccUCGCGCgCGGCCa-- -3'
miRNA:   3'- -CCUGCUGUuAU---AGCGCGgGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 14724 0.69 0.565443
Target:  5'- cGGCGGCGAgccgcugccgGCGCgCGGCCUGUa -3'
miRNA:   3'- cCUGCUGUUauag------CGCGgGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 39849 0.69 0.547818
Target:  5'- aGGGCGGCAAgcgcgcgcaCGCGCUgGGCCgUGUc -3'
miRNA:   3'- -CCUGCUGUUaua------GCGCGGgCUGG-ACA- -5'
26489 5' -53.7 NC_005357.1 + 24659 0.7 0.526037
Target:  5'- aGGAUGGuguUGUCGCGCCCG-CCg-- -3'
miRNA:   3'- -CCUGCUguuAUAGCGCGGGCuGGaca -5'
26489 5' -53.7 NC_005357.1 + 15073 0.7 0.504591
Target:  5'- uGGACGagugcuGCGAgGUCG-GCCCGGCCUa- -3'
miRNA:   3'- -CCUGC------UGUUaUAGCgCGGGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 4367 0.72 0.426983
Target:  5'- cGGACGGCAggcggAUgcgcagccaggcgccGUCGCGCCgGGCCUu- -3'
miRNA:   3'- -CCUGCUGU-----UA---------------UAGCGCGGgCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 25164 0.72 0.423094
Target:  5'- uGGACGGCAAUAUC---CCCGGCUUGc -3'
miRNA:   3'- -CCUGCUGUUAUAGcgcGGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 30987 0.72 0.413467
Target:  5'- cGGugGACGAUcugcUCaCGCgCGACCUGUc -3'
miRNA:   3'- -CCugCUGUUAu---AGcGCGgGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 34654 0.72 0.413467
Target:  5'- gGGugGACGccggcgcagAUCGCGCCgGugCUGc -3'
miRNA:   3'- -CCugCUGUua-------UAGCGCGGgCugGACa -5'
26489 5' -53.7 NC_005357.1 + 41640 0.73 0.367419
Target:  5'- uGACGGCGAUugCGCagcgGCCCGAUCUGa -3'
miRNA:   3'- cCUGCUGUUAuaGCG----CGGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 13465 0.74 0.301381
Target:  5'- cGGGCG-CGGUGUCGgGCauGACCUGg -3'
miRNA:   3'- -CCUGCuGUUAUAGCgCGggCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 32869 0.74 0.301381
Target:  5'- cGGCGcCGAgauUGUCGCGCCCGACUg-- -3'
miRNA:   3'- cCUGCuGUU---AUAGCGCGGGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 13218 0.78 0.176898
Target:  5'- uGGACGcCAugcgCGCGUCCGACCUGc -3'
miRNA:   3'- -CCUGCuGUuauaGCGCGGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 25943 1 0.005442
Target:  5'- uGGACG-CAAUAUCGCGCCCGACCUGUc -3'
miRNA:   3'- -CCUGCuGUUAUAGCGCGGGCUGGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.