Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 19331 | 0.66 | 0.873131 |
Target: 5'- cCGUGGgCGCCGCcGUUG-GCGuCGGGGc -3' miRNA: 3'- -GCACUgGCGGUG-CAGCuUGUuGUUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 19245 | 0.66 | 0.864934 |
Target: 5'- --cGACCuGCUGCuGUCGcacCAGCAGGGg -3' miRNA: 3'- gcaCUGG-CGGUG-CAGCuu-GUUGUUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 19184 | 0.66 | 0.864934 |
Target: 5'- cCGUG-CCGCCGgCGUCGAugAuguucuGGc -3' miRNA: 3'- -GCACuGGCGGU-GCAGCUugUuguu--CC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 19048 | 0.69 | 0.738565 |
Target: 5'- --cGGCCGCCggcgGCGUCGAuCAGCGuguccucgccgAGGu -3' miRNA: 3'- gcaCUGGCGG----UGCAGCUuGUUGU-----------UCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 18402 | 0.74 | 0.452528 |
Target: 5'- gGUGGCgGCCACGUCG-GCGA--AGGu -3' miRNA: 3'- gCACUGgCGGUGCAGCuUGUUguUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 17548 | 0.7 | 0.69459 |
Target: 5'- gCGUGACCGauaacccguaCUACGUCG-AUAGCGGGu -3' miRNA: 3'- -GCACUGGC----------GGUGCAGCuUGUUGUUCc -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 17168 | 0.75 | 0.403382 |
Target: 5'- aGUGACCGagcaGCG-CGAGCAACAGGu -3' miRNA: 3'- gCACUGGCgg--UGCaGCUUGUUGUUCc -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 16066 | 0.69 | 0.727711 |
Target: 5'- aCGUGGCCGCCGCG-C--GCGGCGc-- -3' miRNA: 3'- -GCACUGGCGGUGCaGcuUGUUGUucc -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 15711 | 0.67 | 0.847779 |
Target: 5'- --cGuCCGCCugGgcaUCGAACuggcGCGAGGc -3' miRNA: 3'- gcaCuGGCGGugC---AGCUUGu---UGUUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 14477 | 0.72 | 0.548341 |
Target: 5'- aCGUGcUCGCCAUccccuacggGUCGGGCAGCAAcGGu -3' miRNA: 3'- -GCACuGGCGGUG---------CAGCUUGUUGUU-CC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 14040 | 0.67 | 0.842442 |
Target: 5'- ---cGCCGCCgGCGUCGAACuggaacaccucgcCAAGGa -3' miRNA: 3'- gcacUGGCGG-UGCAGCUUGuu-----------GUUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 13427 | 0.71 | 0.615618 |
Target: 5'- -cUGGUCGCCuACGUCGA-UAACGAGGa -3' miRNA: 3'- gcACUGGCGG-UGCAGCUuGUUGUUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 13111 | 0.66 | 0.873131 |
Target: 5'- --cGACCGCCACcgccUUGAaguGCuggGCAAGGg -3' miRNA: 3'- gcaCUGGCGGUGc---AGCU---UGu--UGUUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 11996 | 0.66 | 0.856481 |
Target: 5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3' miRNA: 3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 11220 | 0.7 | 0.67217 |
Target: 5'- -aUGACCGCCACGUucccgcccaCGcccacuagcguGGCGAUGAGGg -3' miRNA: 3'- gcACUGGCGGUGCA---------GC-----------UUGUUGUUCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 11155 | 0.67 | 0.820273 |
Target: 5'- ---cGCUGCCACGUCGGGguCAACGAa- -3' miRNA: 3'- gcacUGGCGGUGCAGCUU--GUUGUUcc -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 9812 | 0.66 | 0.881063 |
Target: 5'- --cGACCGCgGCGUCGcGGCccuuGACGcGGg -3' miRNA: 3'- gcaCUGGCGgUGCAGC-UUG----UUGUuCC- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 9349 | 0.71 | 0.615618 |
Target: 5'- uGUaGGCCGCCGCGUCGcugcGCGACc--- -3' miRNA: 3'- gCA-CUGGCGGUGCAGCu---UGUUGuucc -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 9319 | 0.67 | 0.810672 |
Target: 5'- -cUGGCgGCgCACGUCGGcGCGGCGGGcGg -3' miRNA: 3'- gcACUGgCG-GUGCAGCU-UGUUGUUC-C- -5' |
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26490 | 3' | -51.4 | NC_005357.1 | + | 8398 | 0.69 | 0.749306 |
Target: 5'- ---cGCCGCCcacgUGUCGGGCAGCGAGc -3' miRNA: 3'- gcacUGGCGGu---GCAGCUUGUUGUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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