Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 5319 | 0.66 | 0.856481 |
Target: 5'- cCGUaGGCCGCgagCACGUgGcGCAGCAuGGc -3' miRNA: 3'- -GCA-CUGGCG---GUGCAgCuUGUUGUuCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 31674 | 0.66 | 0.886454 |
Target: 5'- gCG-GGCCGaagucgagcgcgccCUugG-CGAGCAGCAAGGc -3' miRNA: 3'- -GCaCUGGC--------------GGugCaGCUUGUUGUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 33120 | 0.69 | 0.705711 |
Target: 5'- aCGUGcGCCGCCAgGUCGc----CGAGGa -3' miRNA: 3'- -GCAC-UGGCGGUgCAGCuuguuGUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 19245 | 0.66 | 0.864934 |
Target: 5'- --cGACCuGCUGCuGUCGcacCAGCAGGGg -3' miRNA: 3'- gcaCUGG-CGGUG-CAGCuu-GUUGUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 13111 | 0.66 | 0.873131 |
Target: 5'- --cGACCGCCACcgccUUGAaguGCuggGCAAGGg -3' miRNA: 3'- gcaCUGGCGGUGc---AGCU---UGu--UGUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 22420 | 0.66 | 0.888724 |
Target: 5'- --aGGCgCGCCAUGcCGAGCAaguugGCGAGu -3' miRNA: 3'- gcaCUG-GCGGUGCaGCUUGU-----UGUUCc -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 14040 | 0.67 | 0.842442 |
Target: 5'- ---cGCCGCCgGCGUCGAACuggaacaccucgcCAAGGa -3' miRNA: 3'- gcacUGGCGG-UGCAGCUUGuu-----------GUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 1587 | 0.66 | 0.872323 |
Target: 5'- aGUGGCCGCCGCcuuccuggugGUCGAguGCGuugguuuGCGuGGu -3' miRNA: 3'- gCACUGGCGGUG----------CAGCU--UGU-------UGUuCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 28338 | 0.68 | 0.770398 |
Target: 5'- uCGaUGGCCuugGCCuCGUCGGGCAGCGcgcGGa -3' miRNA: 3'- -GC-ACUGG---CGGuGCAGCUUGUUGUu--CC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 11996 | 0.66 | 0.856481 |
Target: 5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3' miRNA: 3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 39336 | 0.73 | 0.473083 |
Target: 5'- gGUGGuuGCCGCGugUCGAAgGGCAuGGg -3' miRNA: 3'- gCACUggCGGUGC--AGCUUgUUGUuCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 7583 | 0.66 | 0.881063 |
Target: 5'- aGUaGCCGCCGCGUaGggU--CAGGGu -3' miRNA: 3'- gCAcUGGCGGUGCAgCuuGuuGUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 1004 | 0.71 | 0.581781 |
Target: 5'- cCGUGguucACCGCaGCGUCGAACAccuGgAAGGc -3' miRNA: 3'- -GCAC----UGGCGgUGCAGCUUGU---UgUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 6740 | 0.66 | 0.881063 |
Target: 5'- --gGGCCGCCGCGcUC-AAUAGCGgaaAGGu -3' miRNA: 3'- gcaCUGGCGGUGC-AGcUUGUUGU---UCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 35058 | 0.71 | 0.615618 |
Target: 5'- gGUGcCCGCCGCuggaCGAACGACGccgAGGu -3' miRNA: 3'- gCACuGGCGGUGca--GCUUGUUGU---UCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 38851 | 0.66 | 0.881063 |
Target: 5'- aCGUGAcCCGgCGCGUCGcugaaauuuauGCGGCGcGGu -3' miRNA: 3'- -GCACU-GGCgGUGCAGCu----------UGUUGUuCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 34275 | 0.68 | 0.800872 |
Target: 5'- --gGGCCGCaucauCGaggUGAACGGCAAGGg -3' miRNA: 3'- gcaCUGGCGgu---GCa--GCUUGUUGUUCC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 19184 | 0.66 | 0.864934 |
Target: 5'- cCGUG-CCGCCGgCGUCGAugAuguucuGGc -3' miRNA: 3'- -GCACuGGCGGU-GCAGCUugUuguu--CC- -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 336 | 0.68 | 0.770398 |
Target: 5'- -cUGGCgGUgGCGUCGcGCAGCAGGc -3' miRNA: 3'- gcACUGgCGgUGCAGCuUGUUGUUCc -5' |
|||||||
26490 | 3' | -51.4 | NC_005357.1 | + | 29201 | 0.69 | 0.749306 |
Target: 5'- -aUGACCGgCAgGUCGGACGcgcGCAuGGc -3' miRNA: 3'- gcACUGGCgGUgCAGCUUGU---UGUuCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home