miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 38851 0.66 0.881063
Target:  5'- aCGUGAcCCGgCGCGUCGcugaaauuuauGCGGCGcGGu -3'
miRNA:   3'- -GCACU-GGCgGUGCAGCu----------UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 6740 0.66 0.881063
Target:  5'- --gGGCCGCCGCGcUC-AAUAGCGgaaAGGu -3'
miRNA:   3'- gcaCUGGCGGUGC-AGcUUGUUGU---UCC- -5'
26490 3' -51.4 NC_005357.1 + 7583 0.66 0.881063
Target:  5'- aGUaGCCGCCGCGUaGggU--CAGGGu -3'
miRNA:   3'- gCAcUGGCGGUGCAgCuuGuuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 11996 0.66 0.856481
Target:  5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3'
miRNA:   3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 15711 0.67 0.847779
Target:  5'- --cGuCCGCCugGgcaUCGAACuggcGCGAGGc -3'
miRNA:   3'- gcaCuGGCGGugC---AGCUUGu---UGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 19184 0.66 0.864934
Target:  5'- cCGUG-CCGCCGgCGUCGAugAuguucuGGc -3'
miRNA:   3'- -GCACuGGCGGU-GCAGCUugUuguu--CC- -5'
26490 3' -51.4 NC_005357.1 + 39679 0.67 0.847779
Target:  5'- aGUGGUCGgCACGccCGAGCAGCGccGGGc -3'
miRNA:   3'- gCACUGGCgGUGCa-GCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 5595 0.67 0.824055
Target:  5'- cCGUGucgauguCCGCCucguugguagccacgGCGUCGAuguUGGCGAGGu -3'
miRNA:   3'- -GCACu------GGCGG---------------UGCAGCUu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 9319 0.67 0.810672
Target:  5'- -cUGGCgGCgCACGUCGGcGCGGCGGGcGg -3'
miRNA:   3'- gcACUGgCG-GUGCAGCU-UGUUGUUC-C- -5'
26490 3' -51.4 NC_005357.1 + 34275 0.68 0.800872
Target:  5'- --gGGCCGCaucauCGaggUGAACGGCAAGGg -3'
miRNA:   3'- gcaCUGGCGgu---GCa--GCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 336 0.68 0.770398
Target:  5'- -cUGGCgGUgGCGUCGcGCAGCAGGc -3'
miRNA:   3'- gcACUGgCGgUGCAGCuUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 18402 0.74 0.452528
Target:  5'- gGUGGCgGCCACGUCG-GCGA--AGGu -3'
miRNA:   3'- gCACUGgCGGUGCAGCuUGUUguUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.