miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 2041 0.67 0.820273
Target:  5'- --cGGCCGCCucgGCGaCGAugGAuuCAAGGg -3'
miRNA:   3'- gcaCUGGCGG---UGCaGCUugUU--GUUCC- -5'
26490 3' -51.4 NC_005357.1 + 9319 0.67 0.810672
Target:  5'- -cUGGCgGCgCACGUCGGcGCGGCGGGcGg -3'
miRNA:   3'- gcACUGgCG-GUGCAGCU-UGUUGUUC-C- -5'
26490 3' -51.4 NC_005357.1 + 34275 0.68 0.800872
Target:  5'- --gGGCCGCaucauCGaggUGAACGGCAAGGg -3'
miRNA:   3'- gcaCUGGCGgu---GCa--GCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 4040 0.68 0.780723
Target:  5'- ---aGCCgGCCGCGgCGAGCGGCAGGc -3'
miRNA:   3'- gcacUGG-CGGUGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 28338 0.68 0.770398
Target:  5'- uCGaUGGCCuugGCCuCGUCGGGCAGCGcgcGGa -3'
miRNA:   3'- -GC-ACUGG---CGGuGCAGCUUGUUGUu--CC- -5'
26490 3' -51.4 NC_005357.1 + 336 0.68 0.770398
Target:  5'- -cUGGCgGUgGCGUCGcGCAGCAGGc -3'
miRNA:   3'- gcACUGgCGgUGCAGCuUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 8398 0.69 0.749306
Target:  5'- ---cGCCGCCcacgUGUCGGGCAGCGAGc -3'
miRNA:   3'- gcacUGGCGGu---GCAGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 29201 0.69 0.749306
Target:  5'- -aUGACCGgCAgGUCGGACGcgcGCAuGGc -3'
miRNA:   3'- gcACUGGCgGUgCAGCUUGU---UGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 19048 0.69 0.738565
Target:  5'- --cGGCCGCCggcgGCGUCGAuCAGCGuguccucgccgAGGu -3'
miRNA:   3'- gcaCUGGCGG----UGCAGCUuGUUGU-----------UCC- -5'
26490 3' -51.4 NC_005357.1 + 16066 0.69 0.727711
Target:  5'- aCGUGGCCGCCGCG-C--GCGGCGc-- -3'
miRNA:   3'- -GCACUGGCGGUGCaGcuUGUUGUucc -5'
26490 3' -51.4 NC_005357.1 + 5742 0.69 0.716755
Target:  5'- --aGAUCGCCcagcGCGcCGGGCAGCGAGu -3'
miRNA:   3'- gcaCUGGCGG----UGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 33120 0.69 0.705711
Target:  5'- aCGUGcGCCGCCAgGUCGc----CGAGGa -3'
miRNA:   3'- -GCAC-UGGCGGUgCAGCuuguuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 17548 0.7 0.69459
Target:  5'- gCGUGACCGauaacccguaCUACGUCG-AUAGCGGGu -3'
miRNA:   3'- -GCACUGGC----------GGUGCAGCuUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 11220 0.7 0.67217
Target:  5'- -aUGACCGCCACGUucccgcccaCGcccacuagcguGGCGAUGAGGg -3'
miRNA:   3'- gcACUGGCGGUGCA---------GC-----------UUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 32648 0.71 0.615618
Target:  5'- gCGcGACCugGCCGCGUgGAACGAUcuGGa -3'
miRNA:   3'- -GCaCUGG--CGGUGCAgCUUGUUGuuCC- -5'
26490 3' -51.4 NC_005357.1 + 13427 0.71 0.615618
Target:  5'- -cUGGUCGCCuACGUCGA-UAACGAGGa -3'
miRNA:   3'- gcACUGGCGG-UGCAGCUuGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 9349 0.71 0.615618
Target:  5'- uGUaGGCCGCCGCGUCGcugcGCGACc--- -3'
miRNA:   3'- gCA-CUGGCGGUGCAGCu---UGUUGuucc -5'
26490 3' -51.4 NC_005357.1 + 6797 0.71 0.615618
Target:  5'- -aUGACCGCCugGUC-AGC--CAGGGa -3'
miRNA:   3'- gcACUGGCGGugCAGcUUGuuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 35058 0.71 0.615618
Target:  5'- gGUGcCCGCCGCuggaCGAACGACGccgAGGu -3'
miRNA:   3'- gCACuGGCGGUGca--GCUUGUUGU---UCC- -5'
26490 3' -51.4 NC_005357.1 + 1879 0.71 0.614486
Target:  5'- cCGUGGCCggcgcugGCCGgGUgggCGAACAGCAgcGGGa -3'
miRNA:   3'- -GCACUGG-------CGGUgCA---GCUUGUUGU--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.