Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 17346 | 0.68 | 0.424426 |
Target: 5'- gCGCCggGCgCGCUGCGcugGGUgGCGaugcuGCCCg -3' miRNA: 3'- -GUGGa-UG-GCGAUGCa--CCAgUGC-----CGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 16078 | 0.67 | 0.49376 |
Target: 5'- aAUCUGCCGaUACGagcGG-CGCGGCCa -3' miRNA: 3'- gUGGAUGGCgAUGCa--CCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 14728 | 0.7 | 0.31253 |
Target: 5'- gGCgaGCCGCUGCc-GGcgCGCGGCCUg -3' miRNA: 3'- gUGgaUGGCGAUGcaCCa-GUGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 14272 | 0.66 | 0.525035 |
Target: 5'- gGCCUGCUGCaccaUGCuGUcGGcgaUGCGGCCCa -3' miRNA: 3'- gUGGAUGGCG----AUG-CA-CCa--GUGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 14250 | 0.7 | 0.344435 |
Target: 5'- gCACCUGCUGg-GCGUGGgcaACGGCg- -3' miRNA: 3'- -GUGGAUGGCgaUGCACCag-UGCCGgg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 14191 | 0.68 | 0.405704 |
Target: 5'- aGCCUGgcgcaguccgacCCGC-GCGUGGUCGuCGGCg- -3' miRNA: 3'- gUGGAU------------GGCGaUGCACCAGU-GCCGgg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 13557 | 0.66 | 0.525035 |
Target: 5'- aCGCCaGCaGCgaggACGUGG-CGCGGCgCu -3' miRNA: 3'- -GUGGaUGgCGa---UGCACCaGUGCCGgG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 10799 | 0.67 | 0.463365 |
Target: 5'- gCAUgUACUGCUGCGccucGG-CGCGGCUg -3' miRNA: 3'- -GUGgAUGGCGAUGCa---CCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 8621 | 0.73 | 0.196658 |
Target: 5'- gCGCUUcucgGCCGCUGCGguggcgaGGUCGcCGGCCUu -3' miRNA: 3'- -GUGGA----UGGCGAUGCa------CCAGU-GCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 7539 | 0.66 | 0.567826 |
Target: 5'- -uUCUuCCGC-ACGcUGGcUCGCGGCCg -3' miRNA: 3'- guGGAuGGCGaUGC-ACC-AGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 6396 | 0.67 | 0.453452 |
Target: 5'- gGCCgGCCgGCccgGUGuaGUCGCGGCCCa -3' miRNA: 3'- gUGGaUGG-CGaugCAC--CAGUGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 6188 | 0.66 | 0.525035 |
Target: 5'- -uCUUGCCGCaGCGUuugcaGGUgACGGCgCg -3' miRNA: 3'- guGGAUGGCGaUGCA-----CCAgUGCCGgG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 5317 | 0.66 | 0.514521 |
Target: 5'- gGCCguagGCCGCgagcACGUGGcgcagCAUGGCa- -3' miRNA: 3'- gUGGa---UGGCGa---UGCACCa----GUGCCGgg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 4162 | 0.71 | 0.282917 |
Target: 5'- cCACCUugCGCgcCGUGGUCGaGGUguagCCa -3' miRNA: 3'- -GUGGAugGCGauGCACCAGUgCCG----GG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 4040 | 0.69 | 0.378615 |
Target: 5'- aGCCgGCCGCggcgaGCGgcaGGcCAgCGGCCCa -3' miRNA: 3'- gUGGaUGGCGa----UGCa--CCaGU-GCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 2069 | 0.7 | 0.320291 |
Target: 5'- gGCCUGuaGCUugacauCGUGGaCAuCGGCCCa -3' miRNA: 3'- gUGGAUggCGAu-----GCACCaGU-GCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 1988 | 0.66 | 0.514521 |
Target: 5'- cCACCUGCCGUgGC-UGaUCuugaGGCCCa -3' miRNA: 3'- -GUGGAUGGCGaUGcACcAGug--CCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 1140 | 0.66 | 0.557032 |
Target: 5'- aACCguuagcuCgCGCUACGgcggcGGUCACGcCCCa -3' miRNA: 3'- gUGGau-----G-GCGAUGCa----CCAGUGCcGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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