miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 5' -57.4 NC_005357.1 + 13557 0.66 0.525035
Target:  5'- aCGCCaGCaGCgaggACGUGG-CGCGGCgCu -3'
miRNA:   3'- -GUGGaUGgCGa---UGCACCaGUGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 29042 0.71 0.262197
Target:  5'- cCGCCUacaACCGC-GCGcUGGgCAUGGCCUa -3'
miRNA:   3'- -GUGGA---UGGCGaUGC-ACCaGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 42308 0.66 0.525035
Target:  5'- gCACCUA-CGCgaaGUGGUUggACGGCgCg -3'
miRNA:   3'- -GUGGAUgGCGaugCACCAG--UGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 14272 0.66 0.525035
Target:  5'- gGCCUGCUGCaccaUGCuGUcGGcgaUGCGGCCCa -3'
miRNA:   3'- gUGGAUGGCG----AUG-CA-CCa--GUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 36640 0.73 0.20197
Target:  5'- gGCgCUGCCGCgaugGCGggacacgaUGGUCAaGGCCCu -3'
miRNA:   3'- gUG-GAUGGCGa---UGC--------ACCAGUgCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31299 0.66 0.525035
Target:  5'- aGCCUGgCGaCcGCGUGGU---GGCCCg -3'
miRNA:   3'- gUGGAUgGC-GaUGCACCAgugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 41632 0.66 0.514521
Target:  5'- cCACCUGCUGacgGCGauUGcgcaGCGGCCCg -3'
miRNA:   3'- -GUGGAUGGCga-UGC--ACcag-UGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 28586 0.66 0.514521
Target:  5'- gGCC-ACCgGCaGCGUGGUguCGGUCa -3'
miRNA:   3'- gUGGaUGG-CGaUGCACCAguGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 31500 0.71 0.27587
Target:  5'- aUACCuUGCCGCcgGCGUGcugCugGGCCUc -3'
miRNA:   3'- -GUGG-AUGGCGa-UGCACca-GugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 38388 0.69 0.361244
Target:  5'- gGCCUGCCGCU-CGc---CGCGGCCg -3'
miRNA:   3'- gUGGAUGGCGAuGCaccaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 41045 0.68 0.396539
Target:  5'- aACCgUugUGC-GCGUGGcCGCGGCgCCc -3'
miRNA:   3'- gUGG-AugGCGaUGCACCaGUGCCG-GG- -5'
26490 5' -57.4 NC_005357.1 + 18384 0.68 0.405704
Target:  5'- gGCCuUGCCGaugGCGccGGUgGCGGCCa -3'
miRNA:   3'- gUGG-AUGGCga-UGCa-CCAgUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 6396 0.67 0.453452
Target:  5'- gGCCgGCCgGCccgGUGuaGUCGCGGCCCa -3'
miRNA:   3'- gUGGaUGG-CGaugCAC--CAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 33201 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 10799 0.67 0.463365
Target:  5'- gCAUgUACUGCUGCGccucGG-CGCGGCUg -3'
miRNA:   3'- -GUGgAUGGCGAUGCa---CCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 23012 0.67 0.463365
Target:  5'- gGCCUGCUGCUGCGccUGcugUugGGCUUg -3'
miRNA:   3'- gUGGAUGGCGAUGC--ACca-GugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 33752 0.67 0.472383
Target:  5'- aCACCUgggcggcgcagcaGCCGCUGCacacagcgaGUacGG-CGCGGCCUg -3'
miRNA:   3'- -GUGGA-------------UGGCGAUG---------CA--CCaGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 40721 0.67 0.49376
Target:  5'- uCGCC-ACCGacacgauggACGaauUGGUCAUGGCUCg -3'
miRNA:   3'- -GUGGaUGGCga-------UGC---ACCAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 18442 0.67 0.504094
Target:  5'- -uCCUgcACCGaaaACGUgacGGUCGCGGCgCCg -3'
miRNA:   3'- guGGA--UGGCga-UGCA---CCAGUGCCG-GG- -5'
26490 5' -57.4 NC_005357.1 + 1988 0.66 0.514521
Target:  5'- cCACCUGCCGUgGC-UGaUCuugaGGCCCa -3'
miRNA:   3'- -GUGGAUGGCGaUGcACcAGug--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.