Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 37101 | 0.74 | 0.176615 |
Target: 5'- uGCCaUGCUGCgccACGUGcUCGCGGCCUa -3' miRNA: 3'- gUGG-AUGGCGa--UGCACcAGUGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 38219 | 0.75 | 0.158409 |
Target: 5'- aGCCgcaaGCCGCgACGUGcUCGCGGCCa -3' miRNA: 3'- gUGGa---UGGCGaUGCACcAGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 31650 | 0.76 | 0.13427 |
Target: 5'- aUACCgUGCCGCUugGUGGgccuaCAcCGGCCa -3' miRNA: 3'- -GUGG-AUGGCGAugCACCa----GU-GCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33201 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33249 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 42308 | 0.66 | 0.525035 |
Target: 5'- gCACCUA-CGCgaaGUGGUUggACGGCgCg -3' miRNA: 3'- -GUGGAUgGCGaugCACCAG--UGCCGgG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 41632 | 0.66 | 0.514521 |
Target: 5'- cCACCUGCUGacgGCGauUGcgcaGCGGCCCg -3' miRNA: 3'- -GUGGAUGGCga-UGC--ACcag-UGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 28586 | 0.66 | 0.514521 |
Target: 5'- gGCC-ACCgGCaGCGUGGUguCGGUCa -3' miRNA: 3'- gUGGaUGG-CGaUGCACCAguGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 1988 | 0.66 | 0.514521 |
Target: 5'- cCACCUGCCGUgGC-UGaUCuugaGGCCCa -3' miRNA: 3'- -GUGGAUGGCGaUGcACcAGug--CCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 18442 | 0.67 | 0.504094 |
Target: 5'- -uCCUgcACCGaaaACGUgacGGUCGCGGCgCCg -3' miRNA: 3'- guGGA--UGGCga-UGCA---CCAGUGCCG-GG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 40721 | 0.67 | 0.49376 |
Target: 5'- uCGCC-ACCGacacgauggACGaauUGGUCAUGGCUCg -3' miRNA: 3'- -GUGGaUGGCga-------UGC---ACCAGUGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 23012 | 0.67 | 0.463365 |
Target: 5'- gGCCUGCUGCUGCGccUGcugUugGGCUUg -3' miRNA: 3'- gUGGAUGGCGAUGC--ACca-GugCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 10799 | 0.67 | 0.463365 |
Target: 5'- gCAUgUACUGCUGCGccucGG-CGCGGCUg -3' miRNA: 3'- -GUGgAUGGCGAUGCa---CCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33465 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33393 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33345 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33297 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 31611 | 0.76 | 0.126653 |
Target: 5'- cUACCUGCUGCUuuacgcaGCGUGG-CAgGGCCUc -3' miRNA: 3'- -GUGGAUGGCGA-------UGCACCaGUgCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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