miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 5' -57.4 NC_005357.1 + 17694 0.67 0.47339
Target:  5'- -gUCgagGCCGCgcagGCGcGGUggaaGCGGCCCg -3'
miRNA:   3'- guGGa--UGGCGa---UGCaCCAg---UGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 33752 0.67 0.472383
Target:  5'- aCACCUgggcggcgcagcaGCCGCUGCacacagcgaGUacGG-CGCGGCCUg -3'
miRNA:   3'- -GUGGA-------------UGGCGAUG---------CA--CCaGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 33249 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 23012 0.67 0.463365
Target:  5'- gGCCUGCUGCUGCGccUGcugUugGGCUUg -3'
miRNA:   3'- gUGGAUGGCGAUGC--ACca-GugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 10799 0.67 0.463365
Target:  5'- gCAUgUACUGCUGCGccucGG-CGCGGCUg -3'
miRNA:   3'- -GUGgAUGGCGAUGCa---CCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33465 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33393 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33345 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33297 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33201 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 6396 0.67 0.453452
Target:  5'- gGCCgGCCgGCccgGUGuaGUCGCGGCCCa -3'
miRNA:   3'- gUGGaUGG-CGaugCAC--CAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 24718 0.68 0.443655
Target:  5'- aGCUUGCCGCgAUG-GGcauuUCcCGGCCCg -3'
miRNA:   3'- gUGGAUGGCGaUGCaCC----AGuGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 40206 0.68 0.443655
Target:  5'- cCGCCUGCUGC-GCGUGGU-GCuaCCCg -3'
miRNA:   3'- -GUGGAUGGCGaUGCACCAgUGccGGG- -5'
26490 5' -57.4 NC_005357.1 + 35830 0.68 0.424426
Target:  5'- aCGCCaUGCU-CUACGUGGUgC-CGGCCg -3'
miRNA:   3'- -GUGG-AUGGcGAUGCACCA-GuGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 17346 0.68 0.424426
Target:  5'- gCGCCggGCgCGCUGCGcugGGUgGCGaugcuGCCCg -3'
miRNA:   3'- -GUGGa-UG-GCGAUGCa--CCAgUGC-----CGGG- -5'
26490 5' -57.4 NC_005357.1 + 18384 0.68 0.405704
Target:  5'- gGCCuUGCCGaugGCGccGGUgGCGGCCa -3'
miRNA:   3'- gUGG-AUGGCga-UGCa-CCAgUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 14191 0.68 0.405704
Target:  5'- aGCCUGgcgcaguccgacCCGC-GCGUGGUCGuCGGCg- -3'
miRNA:   3'- gUGGAU------------GGCGaUGCACCAGU-GCCGgg -5'
26490 5' -57.4 NC_005357.1 + 41045 0.68 0.396539
Target:  5'- aACCgUugUGC-GCGUGGcCGCGGCgCCc -3'
miRNA:   3'- gUGG-AugGCGaUGCACCaGUGCCG-GG- -5'
26490 5' -57.4 NC_005357.1 + 4040 0.69 0.378615
Target:  5'- aGCCgGCCGCggcgaGCGgcaGGcCAgCGGCCCa -3'
miRNA:   3'- gUGGaUGGCGa----UGCa--CCaGU-GCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 38388 0.69 0.361244
Target:  5'- gGCCUGCCGCU-CGc---CGCGGCCg -3'
miRNA:   3'- gUGGAUGGCGAuGCaccaGUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.