miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26491 3' -54.2 NC_005357.1 + 6262 0.66 0.702056
Target:  5'- gGUGCgguugaucugCGCGCUgG-GCAggCCGAACa -3'
miRNA:   3'- gCACGa---------GUGCGAgCaCGUa-GGCUUGa -5'
26491 3' -54.2 NC_005357.1 + 28483 0.66 0.702056
Target:  5'- aGUGgUCGagcaucCGCUCG-GCAUugCCGAACUc -3'
miRNA:   3'- gCACgAGU------GCGAGCaCGUA--GGCUUGA- -5'
26491 3' -54.2 NC_005357.1 + 7920 0.66 0.702056
Target:  5'- -cUGCUCguuGCGCUCG-GCGUCCa---- -3'
miRNA:   3'- gcACGAG---UGCGAGCaCGUAGGcuuga -5'
26491 3' -54.2 NC_005357.1 + 23693 0.66 0.690945
Target:  5'- gGUGgUCGCGUUCGacgGCAUCCcguGCc -3'
miRNA:   3'- gCACgAGUGCGAGCa--CGUAGGcu-UGa -5'
26491 3' -54.2 NC_005357.1 + 4533 0.68 0.556184
Target:  5'- gCGUGCUgGgCGgUCGUGCcgCCgcgGAACUg -3'
miRNA:   3'- -GCACGAgU-GCgAGCACGuaGG---CUUGA- -5'
26491 3' -54.2 NC_005357.1 + 31347 0.68 0.556184
Target:  5'- gGUGCUCGCGCgcgaccCGgacaCGUUCGAGCa -3'
miRNA:   3'- gCACGAGUGCGa-----GCac--GUAGGCUUGa -5'
26491 3' -54.2 NC_005357.1 + 18243 0.71 0.382456
Target:  5'- aCGUGCUCGCGCUCaUGgAcacgCCGAAg- -3'
miRNA:   3'- -GCACGAGUGCGAGcACgUa---GGCUUga -5'
26491 3' -54.2 NC_005357.1 + 14633 0.72 0.344521
Target:  5'- aCGUGCUgcggcugcgcggcgCGCGCuUCGUGUacguGUCCGAGCc -3'
miRNA:   3'- -GCACGA--------------GUGCG-AGCACG----UAGGCUUGa -5'
26491 3' -54.2 NC_005357.1 + 25580 1.09 0.000917
Target:  5'- aCGUGCUCACGCUCGUGCAUCCGAACUa -3'
miRNA:   3'- -GCACGAGUGCGAGCACGUAGGCUUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.