miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 5' -52.6 NC_005357.1 + 9839 0.75 0.307942
Target:  5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3'
miRNA:   3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 36011 0.75 0.300174
Target:  5'- cGCgaGCGAGGacgaguUCGACGACAUCaccgagGGCGCCg -3'
miRNA:   3'- -CGa-CGCUUU------AGCUGUUGUGG------CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 32005 0.76 0.292559
Target:  5'- -gUGCGAAAcccUCGAC-ACGCUGGaCGCCc -3'
miRNA:   3'- cgACGCUUU---AGCUGuUGUGGCC-GCGG- -5'
26493 5' -52.6 NC_005357.1 + 25721 0.78 0.218595
Target:  5'- cGCgGCGggGUCGuCGuccuCACCGGCGgCa -3'
miRNA:   3'- -CGaCGCuuUAGCuGUu---GUGGCCGCgG- -5'
26493 5' -52.6 NC_005357.1 + 10472 0.78 0.218595
Target:  5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3'
miRNA:   3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5'
26493 5' -52.6 NC_005357.1 + 35170 0.73 0.43247
Target:  5'- aGCUGCacaAGGcCGGCGACAUCGGCccgcGCCa -3'
miRNA:   3'- -CGACGc--UUUaGCUGUUGUGGCCG----CGG- -5'
26493 5' -52.6 NC_005357.1 + 24399 0.72 0.462745
Target:  5'- cGCUGCGcAAGUUGAagaAGCgcaGCCGGC-CCg -3'
miRNA:   3'- -CGACGC-UUUAGCUg--UUG---UGGCCGcGG- -5'
26493 5' -52.6 NC_005357.1 + 24479 0.7 0.545028
Target:  5'- uGCUGCuuggccugcgccagGAAGUCGuaGGgGCUGGCGCCc -3'
miRNA:   3'- -CGACG--------------CUUUAGCugUUgUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 34407 0.71 0.537323
Target:  5'- gGCUGUcac--CGGCGAaGCUGGCGCCa -3'
miRNA:   3'- -CGACGcuuuaGCUGUUgUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 25143 0.71 0.526383
Target:  5'- --gGCGAAgaaGUCGAUAACccACCGGC-CCu -3'
miRNA:   3'- cgaCGCUU---UAGCUGUUG--UGGCCGcGG- -5'
26493 5' -52.6 NC_005357.1 + 15921 0.71 0.515527
Target:  5'- uGCUGCuGAugaaccacaCGAUAgGCugCGGCGCCu -3'
miRNA:   3'- -CGACG-CUuua------GCUGU-UGugGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 2023 0.71 0.504763
Target:  5'- cGCUgGCGAAGUCGcgcagGCGAUagaACaCGGCGCg -3'
miRNA:   3'- -CGA-CGCUUUAGC-----UGUUG---UG-GCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 41304 0.71 0.498351
Target:  5'- cGCUGCucauGAUCGACGGCaagccuuugccgccuACCGcCGCCa -3'
miRNA:   3'- -CGACGcu--UUAGCUGUUG---------------UGGCcGCGG- -5'
26493 5' -52.6 NC_005357.1 + 4811 0.71 0.493036
Target:  5'- cGCUGCGGGAUugcuggcCGGCGACA--GGuCGCCg -3'
miRNA:   3'- -CGACGCUUUA-------GCUGUUGUggCC-GCGG- -5'
26493 5' -52.6 NC_005357.1 + 28382 0.72 0.487747
Target:  5'- --gGCGAGGUguuccaguucgacgcCGGCGGCG-CGGCGCCa -3'
miRNA:   3'- cgaCGCUUUA---------------GCUGUUGUgGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 18456 0.72 0.483535
Target:  5'- --cGUGAcGGUCG-CGGCGCCGGCGgCg -3'
miRNA:   3'- cgaCGCU-UUAGCuGUUGUGGCCGCgG- -5'
26493 5' -52.6 NC_005357.1 + 7207 0.72 0.483535
Target:  5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3'
miRNA:   3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 23953 0.72 0.482485
Target:  5'- cGCccgGCGAGGUCGGCAuuugccgauucauGCGCguauuCGGCGCa -3'
miRNA:   3'- -CGa--CGCUUUAGCUGU-------------UGUG-----GCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 17603 0.72 0.473083
Target:  5'- gGCUGCGc-GUUGuCGAUACCGGCcucgauguuuGCCg -3'
miRNA:   3'- -CGACGCuuUAGCuGUUGUGGCCG----------CGG- -5'
26493 5' -52.6 NC_005357.1 + 32776 0.72 0.472044
Target:  5'- gGCgGCGAAGuccgcccUCGGCAccuCGCUGGUGCUg -3'
miRNA:   3'- -CGaCGCUUU-------AGCUGUu--GUGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.