miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 3' -52.7 NC_005357.1 + 38426 0.66 0.809113
Target:  5'- uGGCCGgCGCGUUUU-GG-GC-GGACa -3'
miRNA:   3'- gCUGGCaGUGCAAAAgCCaCGuCCUG- -5'
26495 3' -52.7 NC_005357.1 + 39915 0.66 0.803233
Target:  5'- uGACCG-CACGcccagcccgaaCGGguUGCAGGACu -3'
miRNA:   3'- gCUGGCaGUGCaaaa-------GCC--ACGUCCUG- -5'
26495 3' -52.7 NC_005357.1 + 24162 0.66 0.779056
Target:  5'- aCGGCCGgCAaGUUcUCGGcGCAGGuCg -3'
miRNA:   3'- -GCUGGCaGUgCAAaAGCCaCGUCCuG- -5'
26495 3' -52.7 NC_005357.1 + 41126 0.66 0.76974
Target:  5'- uGGCCGUCGCccugggcgcggCGGUGU-GGGCg -3'
miRNA:   3'- gCUGGCAGUGcaaaa------GCCACGuCCUG- -5'
26495 3' -52.7 NC_005357.1 + 34317 0.67 0.75819
Target:  5'- -cGCCGgcCGCG----CGGUGCAGGGCc -3'
miRNA:   3'- gcUGGCa-GUGCaaaaGCCACGUCCUG- -5'
26495 3' -52.7 NC_005357.1 + 34229 0.67 0.723709
Target:  5'- uGGCCGcCAUGUcgcugacgaaCGG-GCAGGACg -3'
miRNA:   3'- gCUGGCaGUGCAaaa-------GCCaCGUCCUG- -5'
26495 3' -52.7 NC_005357.1 + 16111 0.69 0.647652
Target:  5'- aCGACCGgcugCACG---UCGGUggccccgacGUAGGACu -3'
miRNA:   3'- -GCUGGCa---GUGCaaaAGCCA---------CGUCCUG- -5'
26495 3' -52.7 NC_005357.1 + 3728 0.69 0.636321
Target:  5'- cCGuGCCGuUCACGc---CGGUGguGGGCa -3'
miRNA:   3'- -GC-UGGC-AGUGCaaaaGCCACguCCUG- -5'
26495 3' -52.7 NC_005357.1 + 8584 0.69 0.624985
Target:  5'- aGGCCG-CGCGUgcggccUGGUGCuGGAUa -3'
miRNA:   3'- gCUGGCaGUGCAaaa---GCCACGuCCUG- -5'
26495 3' -52.7 NC_005357.1 + 16148 0.71 0.481625
Target:  5'- gCGGCCG-CACGcUgaUGGUGguGGGCg -3'
miRNA:   3'- -GCUGGCaGUGCaAaaGCCACguCCUG- -5'
26495 3' -52.7 NC_005357.1 + 4354 0.72 0.470148
Target:  5'- uGGCCGUUGCGUUgcCGGUGCgcgugaaGGcGACg -3'
miRNA:   3'- gCUGGCAGUGCAAaaGCCACG-------UC-CUG- -5'
26495 3' -52.7 NC_005357.1 + 23985 1.1 0.001261
Target:  5'- gCGACCGUCACGUUUUCGGUGCAGGACu -3'
miRNA:   3'- -GCUGGCAGUGCAAAAGCCACGUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.