miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 12901 0.71 0.174636
Target:  5'- uCGUCGCCUUUGgCGAUGcgcucGGCCGCg -3'
miRNA:   3'- uGCGGUGGAAGCgGCUGCa----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 27474 0.71 0.174636
Target:  5'- cGCGCCGCgcacgcaccacgCgaggaUGCCGGCGgccucGGCCGCCa -3'
miRNA:   3'- -UGCGGUG------------Gaa---GCGGCUGCa----CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32684 0.71 0.174636
Target:  5'- -aGCCcgaGCagUUCGCCGACGUGcUCGCCg -3'
miRNA:   3'- ugCGG---UGg-AAGCGGCUGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 30134 0.71 0.179304
Target:  5'- gACGCCGCCguaGCCGGCacgcugGGCCaGCa -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGca----CCGG-CGg -5'
26495 5' -61.2 NC_005357.1 + 3549 0.7 0.187984
Target:  5'- gGCGCCGCCgaauagCGCagcagcgggcugGGCGUacaccgauccgcGGCCGCCa -3'
miRNA:   3'- -UGCGGUGGaa----GCGg-----------CUGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 37526 0.7 0.188971
Target:  5'- gACGuuuCCACCgUgGCCGAaaaCGaGGCCGCCg -3'
miRNA:   3'- -UGC---GGUGGaAgCGGCU---GCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 30427 0.7 0.193974
Target:  5'- cGCGCUGCUg--GCCGACGUGGaaaagGCCa -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGCACCgg---CGG- -5'
26495 5' -61.2 NC_005357.1 + 24762 0.7 0.193974
Target:  5'- uACGCCcaGCC--CGCCGAcgccaucaagauCGUGGCCGUa -3'
miRNA:   3'- -UGCGG--UGGaaGCGGCU------------GCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 41063 0.7 0.193974
Target:  5'- uGCGCUuCggUCGCCGgauGCGcaaGGCCGCCg -3'
miRNA:   3'- -UGCGGuGgaAGCGGC---UGCa--CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 26351 0.7 0.199093
Target:  5'- cACGaCCAUCUacggCGCCGcGCGcGGCgGCCa -3'
miRNA:   3'- -UGC-GGUGGAa---GCGGC-UGCaCCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 37560 0.7 0.204329
Target:  5'- uGCGUgGC--UCGCCGGCGaggauuggaagcUGGCCGCUu -3'
miRNA:   3'- -UGCGgUGgaAGCGGCUGC------------ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 25317 0.7 0.204329
Target:  5'- cUGCCACCggcgcucgUCGCCGGgauUGUccaGGCCgGCCa -3'
miRNA:   3'- uGCGGUGGa-------AGCGGCU---GCA---CCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 27828 0.7 0.204329
Target:  5'- cGCGCUGCCcgCGgUGGCGccGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaaGCgGCUGCa-CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 35985 0.7 0.209685
Target:  5'- gGCGaCGCCUUCGCgGGCGgUGGUguCGCg -3'
miRNA:   3'- -UGCgGUGGAAGCGgCUGC-ACCG--GCGg -5'
26495 5' -61.2 NC_005357.1 + 25151 0.7 0.209685
Target:  5'- gGCGCCGgCUUCGUgGACGgcaauauccccGGCuUGCCg -3'
miRNA:   3'- -UGCGGUgGAAGCGgCUGCa----------CCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 17903 0.7 0.209685
Target:  5'- cGCGgucauCCACCUggaCGUgauCGGCGUGGgCGCCa -3'
miRNA:   3'- -UGC-----GGUGGAa--GCG---GCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 34634 0.7 0.209685
Target:  5'- aGCGCCugCUgggCGgCGAaggGUGGaCGCCg -3'
miRNA:   3'- -UGCGGugGAa--GCgGCUg--CACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 21735 0.69 0.215161
Target:  5'- gAUGCCACCguugggCGCgGccGCGUccacauaggacaGGCCGCCc -3'
miRNA:   3'- -UGCGGUGGaa----GCGgC--UGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 41747 0.69 0.215161
Target:  5'- -gGCCcgGCCggCGCCGcCGUaGGCgGCCu -3'
miRNA:   3'- ugCGG--UGGaaGCGGCuGCA-CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 24145 0.69 0.215161
Target:  5'- uCGCCACCggccCGCUGAC--GGCCGgCa -3'
miRNA:   3'- uGCGGUGGaa--GCGGCUGcaCCGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.