Results 81 - 100 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26495 | 5' | -61.2 | NC_005357.1 | + | 28673 | 0.68 | 0.256993 |
Target: 5'- -gGCgGCCU-CGCCaGCGcGGCgCGCCa -3' miRNA: 3'- ugCGgUGGAaGCGGcUGCaCCG-GCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 34192 | 0.68 | 0.263486 |
Target: 5'- -aGCgA-CUUCGCCGACGagggcacGGCCGCg -3' miRNA: 3'- ugCGgUgGAAGCGGCUGCa------CCGGCGg -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 12020 | 0.68 | 0.263486 |
Target: 5'- aGCGCgGCCgUgGCCGGCGaGGUCuuGCCc -3' miRNA: 3'- -UGCGgUGGaAgCGGCUGCaCCGG--CGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 3723 | 0.68 | 0.263486 |
Target: 5'- gGCGCCcguGCCguucaCGCCgGugGUGggcacgucgguGCCGCCg -3' miRNA: 3'- -UGCGG---UGGaa---GCGG-CugCAC-----------CGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 32921 | 0.68 | 0.263486 |
Target: 5'- gAUGCCACUgUUCGCaCGGCGgaacaGGCUGgCa -3' miRNA: 3'- -UGCGGUGG-AAGCG-GCUGCa----CCGGCgG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 14839 | 0.68 | 0.263486 |
Target: 5'- cACGCCAUCUggCGCCGcCu--GCUGCCg -3' miRNA: 3'- -UGCGGUGGAa-GCGGCuGcacCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 24446 | 0.68 | 0.268775 |
Target: 5'- cGCGCgGCCUcggcgacauugaCGCCGACGaccugcugcuUGGCCugcGCCa -3' miRNA: 3'- -UGCGgUGGAa-----------GCGGCUGC----------ACCGG---CGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 860 | 0.68 | 0.270111 |
Target: 5'- -gGCCuguaugGCUUUCGUuucccuauCGACGagGGCCGCCg -3' miRNA: 3'- ugCGG------UGGAAGCG--------GCUGCa-CCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 38197 | 0.68 | 0.270111 |
Target: 5'- uACGCCAUCUaCGUcugCGACGaUGGCacggugcgCGCCg -3' miRNA: 3'- -UGCGGUGGAaGCG---GCUGC-ACCG--------GCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 13182 | 0.68 | 0.270111 |
Target: 5'- cGCGCUGggcgcCCUUgGCCGGCGuUGuaCGCCu -3' miRNA: 3'- -UGCGGU-----GGAAgCGGCUGC-ACcgGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 19725 | 0.68 | 0.276188 |
Target: 5'- gGCGCCGCgCaUCGCCcugcuugGGC-UGGuuGCCg -3' miRNA: 3'- -UGCGGUG-GaAGCGG-------CUGcACCggCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 20003 | 0.68 | 0.27687 |
Target: 5'- cCGCCGCCgUCaa-GGCGUGGCUGgCg -3' miRNA: 3'- uGCGGUGGaAGcggCUGCACCGGCgG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 8988 | 0.68 | 0.27687 |
Target: 5'- nUGCCGgaUUCGCCaGCgGUGGCCGUg -3' miRNA: 3'- uGCGGUggAAGCGGcUG-CACCGGCGg -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 14989 | 0.68 | 0.27687 |
Target: 5'- aGCGCCaggGCCUgcggcCGCCgGGCGcGGUgCGCCa -3' miRNA: 3'- -UGCGG---UGGAa----GCGG-CUGCaCCG-GCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 23460 | 0.68 | 0.27687 |
Target: 5'- cGCGCgUACa--CGCCGGCGUGGaacaggugCGCCg -3' miRNA: 3'- -UGCG-GUGgaaGCGGCUGCACCg-------GCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 39993 | 0.68 | 0.283762 |
Target: 5'- gGCGCCgAUCUUCgagGCCGGCcu-GCUGCCg -3' miRNA: 3'- -UGCGG-UGGAAG---CGGCUGcacCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 6674 | 0.67 | 0.29079 |
Target: 5'- uGCGCCA----CGCCGAUGUucagGGCCGUg -3' miRNA: 3'- -UGCGGUggaaGCGGCUGCA----CCGGCGg -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 23872 | 0.67 | 0.29079 |
Target: 5'- aGCGCgGCCUcCaCCGACGUgaucgacuucGGCCagGCCa -3' miRNA: 3'- -UGCGgUGGAaGcGGCUGCA----------CCGG--CGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 34850 | 0.67 | 0.29579 |
Target: 5'- uCGCCGacgaCUUCGUgGACGUGuccaagccgguggcGCCGCg -3' miRNA: 3'- uGCGGUg---GAAGCGgCUGCAC--------------CGGCGg -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 14371 | 0.67 | 0.297231 |
Target: 5'- cCGCUguucgagcagACCgUCGCCGACGUguucuucGGCgaCGCCg -3' miRNA: 3'- uGCGG----------UGGaAGCGGCUGCA-------CCG--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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