miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 39993 0.68 0.283762
Target:  5'- gGCGCCgAUCUUCgagGCCGGCcu-GCUGCCg -3'
miRNA:   3'- -UGCGG-UGGAAG---CGGCUGcacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 14989 0.68 0.27687
Target:  5'- aGCGCCaggGCCUgcggcCGCCgGGCGcGGUgCGCCa -3'
miRNA:   3'- -UGCGG---UGGAa----GCGG-CUGCaCCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 20003 0.68 0.27687
Target:  5'- cCGCCGCCgUCaa-GGCGUGGCUGgCg -3'
miRNA:   3'- uGCGGUGGaAGcggCUGCACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 8988 0.68 0.27687
Target:  5'- nUGCCGgaUUCGCCaGCgGUGGCCGUg -3'
miRNA:   3'- uGCGGUggAAGCGGcUG-CACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 23460 0.68 0.27687
Target:  5'- cGCGCgUACa--CGCCGGCGUGGaacaggugCGCCg -3'
miRNA:   3'- -UGCG-GUGgaaGCGGCUGCACCg-------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 19725 0.68 0.276188
Target:  5'- gGCGCCGCgCaUCGCCcugcuugGGC-UGGuuGCCg -3'
miRNA:   3'- -UGCGGUG-GaAGCGG-------CUGcACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 860 0.68 0.270111
Target:  5'- -gGCCuguaugGCUUUCGUuucccuauCGACGagGGCCGCCg -3'
miRNA:   3'- ugCGG------UGGAAGCG--------GCUGCa-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 13182 0.68 0.270111
Target:  5'- cGCGCUGggcgcCCUUgGCCGGCGuUGuaCGCCu -3'
miRNA:   3'- -UGCGGU-----GGAAgCGGCUGC-ACcgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 38197 0.68 0.270111
Target:  5'- uACGCCAUCUaCGUcugCGACGaUGGCacggugcgCGCCg -3'
miRNA:   3'- -UGCGGUGGAaGCG---GCUGC-ACCG--------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 24446 0.68 0.268775
Target:  5'- cGCGCgGCCUcggcgacauugaCGCCGACGaccugcugcuUGGCCugcGCCa -3'
miRNA:   3'- -UGCGgUGGAa-----------GCGGCUGC----------ACCGG---CGG- -5'
26495 5' -61.2 NC_005357.1 + 34192 0.68 0.263486
Target:  5'- -aGCgA-CUUCGCCGACGagggcacGGCCGCg -3'
miRNA:   3'- ugCGgUgGAAGCGGCUGCa------CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 14839 0.68 0.263486
Target:  5'- cACGCCAUCUggCGCCGcCu--GCUGCCg -3'
miRNA:   3'- -UGCGGUGGAa-GCGGCuGcacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32921 0.68 0.263486
Target:  5'- gAUGCCACUgUUCGCaCGGCGgaacaGGCUGgCa -3'
miRNA:   3'- -UGCGGUGG-AAGCG-GCUGCa----CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 12020 0.68 0.263486
Target:  5'- aGCGCgGCCgUgGCCGGCGaGGUCuuGCCc -3'
miRNA:   3'- -UGCGgUGGaAgCGGCUGCaCCGG--CGG- -5'
26495 5' -61.2 NC_005357.1 + 3723 0.68 0.263486
Target:  5'- gGCGCCcguGCCguucaCGCCgGugGUGggcacgucgguGCCGCCg -3'
miRNA:   3'- -UGCGG---UGGaa---GCGG-CugCAC-----------CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 28673 0.68 0.256993
Target:  5'- -gGCgGCCU-CGCCaGCGcGGCgCGCCa -3'
miRNA:   3'- ugCGgUGGAaGCGGcUGCaCCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 18500 0.68 0.250632
Target:  5'- uGCGCCugaccaucacGCCUaUGCCGGCaUGGaaGCCg -3'
miRNA:   3'- -UGCGG----------UGGAaGCGGCUGcACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 23970 0.68 0.250632
Target:  5'- gACGCCGCCggCGCCG-CGa--CCGUCa -3'
miRNA:   3'- -UGCGGUGGaaGCGGCuGCaccGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 14038 0.69 0.244402
Target:  5'- cGCGCCGCCggCGUCGAacUGGaacaccUCGCCa -3'
miRNA:   3'- -UGCGGUGGaaGCGGCUgcACC------GGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18110 0.69 0.241946
Target:  5'- cUGCCGCCUgacccgcggcugcUCGCCGAccucaccgcccccaCGUGGUcacuguccggCGCCa -3'
miRNA:   3'- uGCGGUGGA-------------AGCGGCU--------------GCACCG----------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.