miRNA display CGI


Results 81 - 100 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 42226 0.69 0.2383
Target:  5'- uACGCCACCaugaUGCUGAUGgcggGGaugaCGCCg -3'
miRNA:   3'- -UGCGGUGGaa--GCGGCUGCa---CCg---GCGG- -5'
26495 5' -61.2 NC_005357.1 + 10319 0.69 0.2383
Target:  5'- uCGCCAgUUUCGCCaGGcCGUaGCCGUCg -3'
miRNA:   3'- uGCGGUgGAAGCGG-CU-GCAcCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 10003 0.69 0.2383
Target:  5'- uCGCUGCCgUCGUCuuggcaGACGUGGCgCGCg -3'
miRNA:   3'- uGCGGUGGaAGCGG------CUGCACCG-GCGg -5'
26495 5' -61.2 NC_005357.1 + 41824 0.69 0.2383
Target:  5'- -gGCCAUCaUCGCCGACaUGGCgaaGCa -3'
miRNA:   3'- ugCGGUGGaAGCGGCUGcACCGg--CGg -5'
26495 5' -61.2 NC_005357.1 + 28121 0.69 0.232327
Target:  5'- gGCGCgCGCCagUUCaGCaaCGACGUGGgCCGCa -3'
miRNA:   3'- -UGCG-GUGG--AAG-CG--GCUGCACC-GGCGg -5'
26495 5' -61.2 NC_005357.1 + 40202 0.69 0.232327
Target:  5'- cGCGCCGCCUgcugCGCguggugcuaccCGACGaGGgCGUCg -3'
miRNA:   3'- -UGCGGUGGAa---GCG-----------GCUGCaCCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18431 0.69 0.232327
Target:  5'- cGCGcCCACCUUCGCCagucUGUGcGCCGa- -3'
miRNA:   3'- -UGC-GGUGGAAGCGGcu--GCAC-CGGCgg -5'
26495 5' -61.2 NC_005357.1 + 8965 0.69 0.232327
Target:  5'- gUGCCGCgaUaGCCaGCGUGGCCGUg -3'
miRNA:   3'- uGCGGUGgaAgCGGcUGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 31437 0.69 0.22648
Target:  5'- uACGCUcaugcaauccgGCCUg-GCCGAacagGUGGCCGCa -3'
miRNA:   3'- -UGCGG-----------UGGAagCGGCUg---CACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 32457 0.69 0.22648
Target:  5'- uACGCCcCCUacUGCCGAgGUgggGGCgGCCg -3'
miRNA:   3'- -UGCGGuGGAa-GCGGCUgCA---CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 16770 0.69 0.22648
Target:  5'- -aGCCACCggCGacgugaaGGCGaUGGUCGCCa -3'
miRNA:   3'- ugCGGUGGaaGCgg-----CUGC-ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 4158 0.69 0.223032
Target:  5'- cCGcCCACCUugcgCGCCGugGUcgagguguagccaguGGgCGCCg -3'
miRNA:   3'- uGC-GGUGGAa---GCGGCugCA---------------CCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 25005 0.69 0.220759
Target:  5'- -gGCCACUgcucaagGgCGACGUGGgCGCCg -3'
miRNA:   3'- ugCGGUGGaag----CgGCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 12321 0.69 0.220759
Target:  5'- gGCGCgGCCUcaUCGCCuggGACaagGGCCGUg -3'
miRNA:   3'- -UGCGgUGGA--AGCGG---CUGca-CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 35063 0.69 0.220759
Target:  5'- cCGCCGCUggacgaacgaCGCCGAgGUcgaGGCCGCg -3'
miRNA:   3'- uGCGGUGGaa--------GCGGCUgCA---CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 24145 0.69 0.215161
Target:  5'- uCGCCACCggccCGCUGAC--GGCCGgCa -3'
miRNA:   3'- uGCGGUGGaa--GCGGCUGcaCCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 18889 0.69 0.215161
Target:  5'- -gGCCgagGCCaUCGaCCG-CGUGcGCCGCCu -3'
miRNA:   3'- ugCGG---UGGaAGC-GGCuGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 21735 0.69 0.215161
Target:  5'- gAUGCCACCguugggCGCgGccGCGUccacauaggacaGGCCGCCc -3'
miRNA:   3'- -UGCGGUGGaa----GCGgC--UGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 41747 0.69 0.215161
Target:  5'- -gGCCcgGCCggCGCCGcCGUaGGCgGCCu -3'
miRNA:   3'- ugCGG--UGGaaGCGGCuGCA-CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 35985 0.7 0.209685
Target:  5'- gGCGaCGCCUUCGCgGGCGgUGGUguCGCg -3'
miRNA:   3'- -UGCgGUGGAAGCGgCUGC-ACCG--GCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.