miRNA display CGI


Results 61 - 80 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 17903 0.7 0.209685
Target:  5'- cGCGgucauCCACCUggaCGUgauCGGCGUGGgCGCCa -3'
miRNA:   3'- -UGC-----GGUGGAa--GCG---GCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 17981 0.66 0.351915
Target:  5'- gGCGUCAaugUCGCCGA---GGCCGCg -3'
miRNA:   3'- -UGCGGUggaAGCGGCUgcaCCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 18084 0.66 0.343798
Target:  5'- -gGCCGCCgaaGCCGGCGcgaaccaGGaCGCCu -3'
miRNA:   3'- ugCGGUGGaagCGGCUGCa------CCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18110 0.69 0.241946
Target:  5'- cUGCCGCCUgacccgcggcugcUCGCCGAccucaccgcccccaCGUGGUcacuguccggCGCCa -3'
miRNA:   3'- uGCGGUGGA-------------AGCGGCU--------------GCACCG----------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 18354 0.72 0.144514
Target:  5'- gAUGaCCACCUguUUGCCGGCGgcgagguUGGCCuuGCCg -3'
miRNA:   3'- -UGC-GGUGGA--AGCGGCUGC-------ACCGG--CGG- -5'
26495 5' -61.2 NC_005357.1 + 18405 0.79 0.042541
Target:  5'- cGCGUCGCCUUCGCUGAauUGGCCGaCg -3'
miRNA:   3'- -UGCGGUGGAAGCGGCUgcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 18431 0.69 0.232327
Target:  5'- cGCGcCCACCUUCGCCagucUGUGcGCCGa- -3'
miRNA:   3'- -UGC-GGUGGAAGCGGcu--GCAC-CGGCgg -5'
26495 5' -61.2 NC_005357.1 + 18500 0.68 0.250632
Target:  5'- uGCGCCugaccaucacGCCUaUGCCGGCaUGGaaGCCg -3'
miRNA:   3'- -UGCGG----------UGGAaGCGGCUGcACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 18573 0.66 0.385724
Target:  5'- -gGCCGCgCUcgCGgUGACGgccUGGCCGUCc -3'
miRNA:   3'- ugCGGUG-GAa-GCgGCUGC---ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18751 0.71 0.156616
Target:  5'- cGCGaCCACCUuuUUGCCGGCGauuucuuccaucgUcagcgucgaGGCCGCCa -3'
miRNA:   3'- -UGC-GGUGGA--AGCGGCUGC-------------A---------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18889 0.69 0.215161
Target:  5'- -gGCCgagGCCaUCGaCCG-CGUGcGCCGCCu -3'
miRNA:   3'- ugCGG---UGGaAGC-GGCuGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18961 0.67 0.305254
Target:  5'- -gGgCACCUguuccaCGCCGGCGUGuaCGCg -3'
miRNA:   3'- ugCgGUGGAa-----GCGGCUGCACcgGCGg -5'
26495 5' -61.2 NC_005357.1 + 19069 0.66 0.343798
Target:  5'- aGCGUguCCU-CGCCGAgGUcacgcgauugcaGGCCgGCCu -3'
miRNA:   3'- -UGCGguGGAaGCGGCUgCA------------CCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 19069 0.78 0.050454
Target:  5'- cACGCCACCguguucaUCGgCGGCGaGGCCGUCg -3'
miRNA:   3'- -UGCGGUGGa------AGCgGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19186 0.71 0.157035
Target:  5'- gUGCCGCCggCGUCGAUGauguucUGGCCGUUc -3'
miRNA:   3'- uGCGGUGGaaGCGGCUGC------ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19224 0.66 0.368554
Target:  5'- -gGCCGaaUUCaCCGACGaGGCCGaCCu -3'
miRNA:   3'- ugCGGUggAAGcGGCUGCaCCGGC-GG- -5'
26495 5' -61.2 NC_005357.1 + 19266 0.71 0.165186
Target:  5'- gGCGUCgauGCUggaaUCGCCGuagaacaGCGUGGUCGCCu -3'
miRNA:   3'- -UGCGG---UGGa---AGCGGC-------UGCACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19316 0.76 0.070793
Target:  5'- cCGUUACCgcugUCGCCGugG-GcGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCugCaC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19725 0.68 0.276188
Target:  5'- gGCGCCGCgCaUCGCCcugcuugGGC-UGGuuGCCg -3'
miRNA:   3'- -UGCGGUG-GaAGCGG-------CUGcACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 20003 0.68 0.27687
Target:  5'- cCGCCGCCgUCaa-GGCGUGGCUGgCg -3'
miRNA:   3'- uGCGGUGGaAGcggCUGCACCGGCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.