miRNA display CGI


Results 101 - 120 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 25762 0.66 0.368554
Target:  5'- cGCGCUGCUgggCGgCGGCaacgaUGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaa-GCgGCUGc----ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 26245 0.66 0.374503
Target:  5'- cGCGUCGCCgaaggcacgggcaccCGCCGGCcUGGUCGgCu -3'
miRNA:   3'- -UGCGGUGGaa-------------GCGGCUGcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 26351 0.7 0.199093
Target:  5'- cACGaCCAUCUacggCGCCGcGCGcGGCgGCCa -3'
miRNA:   3'- -UGC-GGUGGAa---GCGGC-UGCaCCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 27474 0.71 0.174636
Target:  5'- cGCGCCGCgcacgcaccacgCgaggaUGCCGGCGgccucGGCCGCCa -3'
miRNA:   3'- -UGCGGUG------------Gaa---GCGGCUGCa----CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 27574 0.72 0.144903
Target:  5'- gGCGCC-Cag-CGUgCGGCGcUGGCCGCCa -3'
miRNA:   3'- -UGCGGuGgaaGCG-GCUGC-ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 27670 0.74 0.104503
Target:  5'- gGCGCCACCUcCaCCGugGUcuuggaauacaGGCCGCg -3'
miRNA:   3'- -UGCGGUGGAaGcGGCugCA-----------CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 27828 0.7 0.204329
Target:  5'- cGCGCUGCCcgCGgUGGCGccGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaaGCgGCUGCa-CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 28121 0.69 0.232327
Target:  5'- gGCGCgCGCCagUUCaGCaaCGACGUGGgCCGCa -3'
miRNA:   3'- -UGCG-GUGG--AAG-CG--GCUGCACC-GGCGg -5'
26495 5' -61.2 NC_005357.1 + 28673 0.68 0.256993
Target:  5'- -gGCgGCCU-CGCCaGCGcGGCgCGCCa -3'
miRNA:   3'- ugCGgUGGAaGCGGcUGCaCCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 28872 0.71 0.174176
Target:  5'- cGCGCCACgUccUCGCUgcuGGCGUaguugcuGGCCGUCg -3'
miRNA:   3'- -UGCGGUGgA--AGCGG---CUGCA-------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 28989 0.72 0.141053
Target:  5'- -gGCCGCCaa-GCUGGCG-GGCCuGCCg -3'
miRNA:   3'- ugCGGUGGaagCGGCUGCaCCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 29119 0.74 0.101662
Target:  5'- uACGCCGCCUacaaCGCCGGCcccGGCgCGCUg -3'
miRNA:   3'- -UGCGGUGGAa---GCGGCUGca-CCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 30134 0.71 0.179304
Target:  5'- gACGCCGCCguaGCCGGCacgcugGGCCaGCa -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGca----CCGG-CGg -5'
26495 5' -61.2 NC_005357.1 + 30427 0.7 0.193974
Target:  5'- cGCGCUGCUg--GCCGACGUGGaaaagGCCa -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGCACCgg---CGG- -5'
26495 5' -61.2 NC_005357.1 + 30995 0.67 0.297954
Target:  5'- cGCGCCuuaucggcgACCUgcaCGCCGGCuc-GCCGCUg -3'
miRNA:   3'- -UGCGG---------UGGAa--GCGGCUGcacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 31055 0.73 0.126573
Target:  5'- uCGCCACCgaggUGCCgGGCGagcaGGUCGCCa -3'
miRNA:   3'- uGCGGUGGaa--GCGG-CUGCa---CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 31294 0.66 0.360168
Target:  5'- aGCGaaGCCUggCGaCCG-CGUGGUgGCCc -3'
miRNA:   3'- -UGCggUGGAa-GC-GGCuGCACCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 31437 0.69 0.22648
Target:  5'- uACGCUcaugcaauccgGCCUg-GCCGAacagGUGGCCGCa -3'
miRNA:   3'- -UGCGG-----------UGGAagCGGCUg---CACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 32303 0.66 0.343798
Target:  5'- uGCGCgACCUcaUCGCCGcCaucaaGGCCGgCg -3'
miRNA:   3'- -UGCGgUGGA--AGCGGCuGca---CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 32345 0.73 0.11663
Target:  5'- cCGCCGCCcaggUCGCUG-CGgucGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCuGCac-CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.