miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 36053 0.72 0.133633
Target:  5'- -gGCCugcGCCUgaUUGCCGACGUGGgccgguUCGCCa -3'
miRNA:   3'- ugCGG---UGGA--AGCGGCUGCACC------GGCGG- -5'
26495 5' -61.2 NC_005357.1 + 35985 0.7 0.209685
Target:  5'- gGCGaCGCCUUCGCgGGCGgUGGUguCGCg -3'
miRNA:   3'- -UGCgGUGGAAGCGgCUGC-ACCG--GCGg -5'
26495 5' -61.2 NC_005357.1 + 35063 0.69 0.220759
Target:  5'- cCGCCGCUggacgaacgaCGCCGAgGUcgaGGCCGCg -3'
miRNA:   3'- uGCGGUGGaa--------GCGGCUgCA---CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 34850 0.67 0.29579
Target:  5'- uCGCCGacgaCUUCGUgGACGUGuccaagccgguggcGCCGCg -3'
miRNA:   3'- uGCGGUg---GAAGCGgCUGCAC--------------CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 34691 0.66 0.385724
Target:  5'- uCGCCaacagcaaGCCggcCGCCGAgCGUGcGCUGCa -3'
miRNA:   3'- uGCGG--------UGGaa-GCGGCU-GCAC-CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 34634 0.7 0.209685
Target:  5'- aGCGCCugCUgggCGgCGAaggGUGGaCGCCg -3'
miRNA:   3'- -UGCGGugGAa--GCgGCUg--CACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 34426 0.73 0.119861
Target:  5'- gGCGCCAagggcacguCCgaCGCCGugGUGcuGCUGCCu -3'
miRNA:   3'- -UGCGGU---------GGaaGCGGCugCAC--CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 34230 0.73 0.130059
Target:  5'- -gGCCGCCaugUCGCUGACGaacgGGCaggaCGCCa -3'
miRNA:   3'- ugCGGUGGa--AGCGGCUGCa---CCG----GCGG- -5'
26495 5' -61.2 NC_005357.1 + 34192 0.68 0.263486
Target:  5'- -aGCgA-CUUCGCCGACGagggcacGGCCGCg -3'
miRNA:   3'- ugCGgUgGAAGCGGCUGCa------CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 33642 0.66 0.366866
Target:  5'- gGCGCgGCCgacccaucgugCGCCG-CGUG-CUGCCc -3'
miRNA:   3'- -UGCGgUGGaa---------GCGGCuGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 33203 0.74 0.101662
Target:  5'- cUGCCGCCgggcgCGCCGcagaACGUGcGCCGCg -3'
miRNA:   3'- uGCGGUGGaa---GCGGC----UGCAC-CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 33102 0.89 0.006919
Target:  5'- cCGCCGCCcgccgCGCCGACGUGcGCCGCCa -3'
miRNA:   3'- uGCGGUGGaa---GCGGCUGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32921 0.68 0.263486
Target:  5'- gAUGCCACUgUUCGCaCGGCGgaacaGGCUGgCa -3'
miRNA:   3'- -UGCGGUGG-AAGCG-GCUGCa----CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 32875 0.66 0.380518
Target:  5'- uCGCCACCggCgagcagaucgcacugGCCGAacaG-GGCCGCa -3'
miRNA:   3'- uGCGGUGGaaG---------------CGGCUg--CaCCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 32684 0.71 0.174636
Target:  5'- -aGCCcgaGCagUUCGCCGACGUGcUCGCCg -3'
miRNA:   3'- ugCGG---UGg-AAGCGGCUGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32457 0.69 0.22648
Target:  5'- uACGCCcCCUacUGCCGAgGUgggGGCgGCCg -3'
miRNA:   3'- -UGCGGuGGAa-GCGGCUgCA---CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 32345 0.73 0.11663
Target:  5'- cCGCCGCCcaggUCGCUG-CGgucGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCuGCac-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32303 0.66 0.343798
Target:  5'- uGCGCgACCUcaUCGCCGcCaucaaGGCCGgCg -3'
miRNA:   3'- -UGCGgUGGA--AGCGGCuGca---CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 31437 0.69 0.22648
Target:  5'- uACGCUcaugcaauccgGCCUg-GCCGAacagGUGGCCGCa -3'
miRNA:   3'- -UGCGG-----------UGGAagCGGCUg---CACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 31294 0.66 0.360168
Target:  5'- aGCGaaGCCUggCGaCCG-CGUGGUgGCCc -3'
miRNA:   3'- -UGCggUGGAa-GC-GGCuGCACCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.