miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 25005 0.69 0.220759
Target:  5'- -gGCCACUgcucaagGgCGACGUGGgCGCCg -3'
miRNA:   3'- ugCGGUGGaag----CgGCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 24953 0.66 0.360168
Target:  5'- uCGCCGCUgUUCGUgcaggcccUGGCGUGGCaccugGCCu -3'
miRNA:   3'- uGCGGUGG-AAGCG--------GCUGCACCGg----CGG- -5'
26495 5' -61.2 NC_005357.1 + 24762 0.7 0.193974
Target:  5'- uACGCCcaGCC--CGCCGAcgccaucaagauCGUGGCCGUa -3'
miRNA:   3'- -UGCGG--UGGaaGCGGCU------------GCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 24446 0.68 0.268775
Target:  5'- cGCGCgGCCUcggcgacauugaCGCCGACGaccugcugcuUGGCCugcGCCa -3'
miRNA:   3'- -UGCGgUGGAa-----------GCGGCUGC----------ACCGG---CGG- -5'
26495 5' -61.2 NC_005357.1 + 24145 0.69 0.215161
Target:  5'- uCGCCACCggccCGCUGAC--GGCCGgCa -3'
miRNA:   3'- uGCGGUGGaa--GCGGCUGcaCCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 24021 1.11 0.000149
Target:  5'- aACGCCACCUUCGCCGACGUGGCCGCCa -3'
miRNA:   3'- -UGCGGUGGAAGCGGCUGCACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 23970 0.68 0.250632
Target:  5'- gACGCCGCCggCGCCG-CGa--CCGUCa -3'
miRNA:   3'- -UGCGGUGGaaGCGGCuGCaccGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 23872 0.67 0.29079
Target:  5'- aGCGCgGCCUcCaCCGACGUgaucgacuucGGCCagGCCa -3'
miRNA:   3'- -UGCGgUGGAaGcGGCUGCA----------CCGG--CGG- -5'
26495 5' -61.2 NC_005357.1 + 23764 0.73 0.123175
Target:  5'- gGCGCCACCgg-GCCGAUGc-GCCGCg -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGCacCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 23460 0.68 0.27687
Target:  5'- cGCGCgUACa--CGCCGGCGUGGaacaggugCGCCg -3'
miRNA:   3'- -UGCG-GUGgaaGCGGCUGCACCg-------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 23378 0.67 0.327971
Target:  5'- cACGCUgAUCgaCGCCGcCGgcGGCCGCUa -3'
miRNA:   3'- -UGCGG-UGGaaGCGGCuGCa-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 23358 0.66 0.360168
Target:  5'- uCGCCGCCgaugaacaCGgUGGCGUGcCCGCUg -3'
miRNA:   3'- uGCGGUGGaa------GCgGCUGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 21735 0.69 0.215161
Target:  5'- gAUGCCACCguugggCGCgGccGCGUccacauaggacaGGCCGCCc -3'
miRNA:   3'- -UGCGGUGGaa----GCGgC--UGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 21132 0.66 0.385724
Target:  5'- gACGCUGCCcagcUUgGCCGcCGUGuCCGCg -3'
miRNA:   3'- -UGCGGUGG----AAgCGGCuGCACcGGCGg -5'
26495 5' -61.2 NC_005357.1 + 20188 0.72 0.141053
Target:  5'- uACGCCAUCgcgGCCGACaaccagGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGca----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 20149 0.66 0.351915
Target:  5'- gACGCCguggucuaucACCaUUCGCUGAC--GGCCGgCg -3'
miRNA:   3'- -UGCGG----------UGG-AAGCGGCUGcaCCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 20003 0.68 0.27687
Target:  5'- cCGCCGCCgUCaa-GGCGUGGCUGgCg -3'
miRNA:   3'- uGCGGUGGaAGcggCUGCACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 19725 0.68 0.276188
Target:  5'- gGCGCCGCgCaUCGCCcugcuugGGC-UGGuuGCCg -3'
miRNA:   3'- -UGCGGUG-GaAGCGG-------CUGcACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 19316 0.76 0.070793
Target:  5'- cCGUUACCgcugUCGCCGugG-GcGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCugCaC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19266 0.71 0.165186
Target:  5'- gGCGUCgauGCUggaaUCGCCGuagaacaGCGUGGUCGCCu -3'
miRNA:   3'- -UGCGG---UGGa---AGCGGC-------UGCACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.