miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 35063 0.69 0.220759
Target:  5'- cCGCCGCUggacgaacgaCGCCGAgGUcgaGGCCGCg -3'
miRNA:   3'- uGCGGUGGaa--------GCGGCUgCA---CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 21735 0.69 0.215161
Target:  5'- gAUGCCACCguugggCGCgGccGCGUccacauaggacaGGCCGCCc -3'
miRNA:   3'- -UGCGGUGGaa----GCGgC--UGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 35985 0.7 0.209685
Target:  5'- gGCGaCGCCUUCGCgGGCGgUGGUguCGCg -3'
miRNA:   3'- -UGCgGUGGAAGCGgCUGC-ACCG--GCGg -5'
26495 5' -61.2 NC_005357.1 + 27828 0.7 0.204329
Target:  5'- cGCGCUGCCcgCGgUGGCGccGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaaGCgGCUGCa-CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 28872 0.71 0.174176
Target:  5'- cGCGCCACgUccUCGCUgcuGGCGUaguugcuGGCCGUCg -3'
miRNA:   3'- -UGCGGUGgA--AGCGG---CUGCA-------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 12901 0.71 0.174636
Target:  5'- uCGUCGCCUUUGgCGAUGcgcucGGCCGCg -3'
miRNA:   3'- uGCGGUGGAAGCgGCUGCa----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 27474 0.71 0.174636
Target:  5'- cGCGCCGCgcacgcaccacgCgaggaUGCCGGCGgccucGGCCGCCa -3'
miRNA:   3'- -UGCGGUG------------Gaa---GCGGCUGCa----CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32684 0.71 0.174636
Target:  5'- -aGCCcgaGCagUUCGCCGACGUGcUCGCCg -3'
miRNA:   3'- ugCGG---UGg-AAGCGGCUGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 3549 0.7 0.187984
Target:  5'- gGCGCCGCCgaauagCGCagcagcgggcugGGCGUacaccgauccgcGGCCGCCa -3'
miRNA:   3'- -UGCGGUGGaa----GCGg-----------CUGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 37560 0.7 0.204329
Target:  5'- uGCGUgGC--UCGCCGGCGaggauuggaagcUGGCCGCUu -3'
miRNA:   3'- -UGCGgUGgaAGCGGCUGC------------ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 25317 0.7 0.204329
Target:  5'- cUGCCACCggcgcucgUCGCCGGgauUGUccaGGCCgGCCa -3'
miRNA:   3'- uGCGGUGGa-------AGCGGCU---GCA---CCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 14206 0.75 0.091011
Target:  5'- gAC-CCGCgCguggUCGUCGGCGUGGCCGaCCu -3'
miRNA:   3'- -UGcGGUG-Ga---AGCGGCUGCACCGGC-GG- -5'
26495 5' -61.2 NC_005357.1 + 13756 0.75 0.088518
Target:  5'- gGCG-CGCCg-CGCUGGCGaGGCCGCCg -3'
miRNA:   3'- -UGCgGUGGaaGCGGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 16809 0.76 0.077
Target:  5'- cGCGCUGCUggcgaccgCGCCGcCGUGGuuGCCa -3'
miRNA:   3'- -UGCGGUGGaa------GCGGCuGCACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 19316 0.76 0.070793
Target:  5'- cCGUUACCgcugUCGCCGugG-GcGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCugCaC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 13852 0.76 0.066926
Target:  5'- cACGCUGCCggUgGCCGACGUGcgcGCCGCg -3'
miRNA:   3'- -UGCGGUGGa-AgCGGCUGCAC---CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 19069 0.78 0.050454
Target:  5'- cACGCCACCguguucaUCGgCGGCGaGGCCGUCg -3'
miRNA:   3'- -UGCGGUGGa------AGCgGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18405 0.79 0.042541
Target:  5'- cGCGUCGCCUUCGCUGAauUGGCCGaCg -3'
miRNA:   3'- -UGCGGUGGAAGCGGCUgcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 33102 0.89 0.006919
Target:  5'- cCGCCGCCcgccgCGCCGACGUGcGCCGCCa -3'
miRNA:   3'- uGCGGUGGaa---GCGGCUGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 41601 0.66 0.385724
Target:  5'- uGC-CCACCUg-GCCGACGUucGGCaaggGCUg -3'
miRNA:   3'- -UGcGGUGGAagCGGCUGCA--CCGg---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.