miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 26351 0.7 0.199093
Target:  5'- cACGaCCAUCUacggCGCCGcGCGcGGCgGCCa -3'
miRNA:   3'- -UGC-GGUGGAa---GCGGC-UGCaCCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 17903 0.7 0.209685
Target:  5'- cGCGgucauCCACCUggaCGUgauCGGCGUGGgCGCCa -3'
miRNA:   3'- -UGC-----GGUGGAa--GCG---GCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 25151 0.7 0.209685
Target:  5'- gGCGCCGgCUUCGUgGACGgcaauauccccGGCuUGCCg -3'
miRNA:   3'- -UGCGGUgGAAGCGgCUGCa----------CCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 34634 0.7 0.209685
Target:  5'- aGCGCCugCUgggCGgCGAaggGUGGaCGCCg -3'
miRNA:   3'- -UGCGGugGAa--GCgGCUg--CACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 41747 0.69 0.215161
Target:  5'- -gGCCcgGCCggCGCCGcCGUaGGCgGCCu -3'
miRNA:   3'- ugCGG--UGGaaGCGGCuGCA-CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 28989 0.72 0.141053
Target:  5'- -gGCCGCCaa-GCUGGCG-GGCCuGCCg -3'
miRNA:   3'- ugCGGUGGaagCGGCUGCaCCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 20188 0.72 0.141053
Target:  5'- uACGCCAUCgcgGCCGACaaccagGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGca----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 33102 0.89 0.006919
Target:  5'- cCGCCGCCcgccgCGCCGACGUGcGCCGCCa -3'
miRNA:   3'- uGCGGUGGaa---GCGGCUGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18405 0.79 0.042541
Target:  5'- cGCGUCGCCUUCGCUGAauUGGCCGaCg -3'
miRNA:   3'- -UGCGGUGGAAGCGGCUgcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 19069 0.78 0.050454
Target:  5'- cACGCCACCguguucaUCGgCGGCGaGGCCGUCg -3'
miRNA:   3'- -UGCGGUGGa------AGCgGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 13852 0.76 0.066926
Target:  5'- cACGCUGCCggUgGCCGACGUGcgcGCCGCg -3'
miRNA:   3'- -UGCGGUGGa-AgCGGCUGCAC---CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 19316 0.76 0.070793
Target:  5'- cCGUUACCgcugUCGCCGugG-GcGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCugCaC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 16809 0.76 0.077
Target:  5'- cGCGCUGCUggcgaccgCGCCGcCGUGGuuGCCa -3'
miRNA:   3'- -UGCGGUGGaa------GCGGCuGCACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 13756 0.75 0.088518
Target:  5'- gGCG-CGCCg-CGCUGGCGaGGCCGCCg -3'
miRNA:   3'- -UGCgGUGGaaGCGGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 14206 0.75 0.091011
Target:  5'- gAC-CCGCgCguggUCGUCGGCGUGGCCGaCCu -3'
miRNA:   3'- -UGcGGUG-Ga---AGCGGCUGCACCGGC-GG- -5'
26495 5' -61.2 NC_005357.1 + 29119 0.74 0.101662
Target:  5'- uACGCCGCCUacaaCGCCGGCcccGGCgCGCUg -3'
miRNA:   3'- -UGCGGUGGAa---GCGGCUGca-CCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 33203 0.74 0.101662
Target:  5'- cUGCCGCCgggcgCGCCGcagaACGUGcGCCGCg -3'
miRNA:   3'- uGCGGUGGaa---GCGGC----UGCAC-CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 2019 0.74 0.110411
Target:  5'- uACGCCACCagCaCCGGCauaccGGCCGCCu -3'
miRNA:   3'- -UGCGGUGGaaGcGGCUGca---CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 31055 0.73 0.126573
Target:  5'- uCGCCACCgaggUGCCgGGCGagcaGGUCGCCa -3'
miRNA:   3'- uGCGGUGGaa--GCGG-CUGCa---CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 36053 0.72 0.133633
Target:  5'- -gGCCugcGCCUgaUUGCCGACGUGGgccgguUCGCCa -3'
miRNA:   3'- ugCGG---UGGA--AGCGGCUGCACC------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.