miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 25005 0.69 0.220759
Target:  5'- -gGCCACUgcucaagGgCGACGUGGgCGCCg -3'
miRNA:   3'- ugCGGUGGaag----CgGCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 14920 0.72 0.152892
Target:  5'- cGCGCCGagaa-GCUGGCGgccgaGGCCGCCg -3'
miRNA:   3'- -UGCGGUggaagCGGCUGCa----CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18405 0.79 0.042541
Target:  5'- cGCGUCGCCUUCGCUGAauUGGCCGaCg -3'
miRNA:   3'- -UGCGGUGGAAGCGGCUgcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 12321 0.69 0.220759
Target:  5'- gGCGCgGCCUcaUCGCCuggGACaagGGCCGUg -3'
miRNA:   3'- -UGCGgUGGA--AGCGG---CUGca-CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 33102 0.89 0.006919
Target:  5'- cCGCCGCCcgccgCGCCGACGUGcGCCGCCa -3'
miRNA:   3'- uGCGGUGGaa---GCGGCUGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18961 0.67 0.305254
Target:  5'- -gGgCACCUguuccaCGCCGGCGUGuaCGCg -3'
miRNA:   3'- ugCgGUGGAa-----GCGGCUGCACcgGCGg -5'
26495 5' -61.2 NC_005357.1 + 13852 0.76 0.066926
Target:  5'- cACGCUGCCggUgGCCGACGUGcgcGCCGCg -3'
miRNA:   3'- -UGCGGUGGa-AgCGGCUGCAC---CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 14371 0.67 0.297231
Target:  5'- cCGCUguucgagcagACCgUCGCCGACGUguucuucGGCgaCGCCg -3'
miRNA:   3'- uGCGG----------UGGaAGCGGCUGCA-------CCG--GCGG- -5'
26495 5' -61.2 NC_005357.1 + 20003 0.68 0.27687
Target:  5'- cCGCCGCCgUCaa-GGCGUGGCUGgCg -3'
miRNA:   3'- uGCGGUGGaAGcggCUGCACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 32921 0.68 0.263486
Target:  5'- gAUGCCACUgUUCGCaCGGCGgaacaGGCUGgCa -3'
miRNA:   3'- -UGCGGUGG-AAGCG-GCUGCa----CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 18500 0.68 0.250632
Target:  5'- uGCGCCugaccaucacGCCUaUGCCGGCaUGGaaGCCg -3'
miRNA:   3'- -UGCGG----------UGGAaGCGGCUGcACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 40202 0.69 0.232327
Target:  5'- cGCGCCGCCUgcugCGCguggugcuaccCGACGaGGgCGUCg -3'
miRNA:   3'- -UGCGGUGGAa---GCG-----------GCUGCaCCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8965 0.69 0.232327
Target:  5'- gUGCCGCgaUaGCCaGCGUGGCCGUg -3'
miRNA:   3'- uGCGGUGgaAgCGGcUGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 41747 0.69 0.215161
Target:  5'- -gGCCcgGCCggCGCCGcCGUaGGCgGCCu -3'
miRNA:   3'- ugCGG--UGGaaGCGGCuGCA-CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 17903 0.7 0.209685
Target:  5'- cGCGgucauCCACCUggaCGUgauCGGCGUGGgCGCCa -3'
miRNA:   3'- -UGC-----GGUGGAa--GCG---GCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 24762 0.7 0.193974
Target:  5'- uACGCCcaGCC--CGCCGAcgccaucaagauCGUGGCCGUa -3'
miRNA:   3'- -UGCGG--UGGaaGCGGCU------------GCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 16674 0.71 0.157035
Target:  5'- cCGCCGCCcagcagcgCGCCcaGCGUGcuGCCGCCg -3'
miRNA:   3'- uGCGGUGGaa------GCGGc-UGCAC--CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 20188 0.72 0.141053
Target:  5'- uACGCCAUCgcgGCCGACaaccagGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGca----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 2019 0.74 0.110411
Target:  5'- uACGCCACCagCaCCGGCauaccGGCCGCCu -3'
miRNA:   3'- -UGCGGUGGaaGcGGCUGca---CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 13756 0.75 0.088518
Target:  5'- gGCG-CGCCg-CGCUGGCGaGGCCGCCg -3'
miRNA:   3'- -UGCgGUGGaaGCGGCUGCaCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.