miRNA display CGI


Results 61 - 80 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 28121 0.69 0.232327
Target:  5'- gGCGCgCGCCagUUCaGCaaCGACGUGGgCCGCa -3'
miRNA:   3'- -UGCG-GUGG--AAG-CG--GCUGCACC-GGCGg -5'
26495 5' -61.2 NC_005357.1 + 18110 0.69 0.241946
Target:  5'- cUGCCGCCUgacccgcggcugcUCGCCGAccucaccgcccccaCGUGGUcacuguccggCGCCa -3'
miRNA:   3'- uGCGGUGGA-------------AGCGGCU--------------GCACCG----------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 28989 0.72 0.141053
Target:  5'- -gGCCGCCaa-GCUGGCG-GGCCuGCCg -3'
miRNA:   3'- ugCGGUGGaagCGGCUGCaCCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 5345 0.71 0.157035
Target:  5'- cAUGgCAUCg-CGCUG-CGUGGCCGCCu -3'
miRNA:   3'- -UGCgGUGGaaGCGGCuGCACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 24762 0.7 0.193974
Target:  5'- uACGCCcaGCC--CGCCGAcgccaucaagauCGUGGCCGUa -3'
miRNA:   3'- -UGCGG--UGGaaGCGGCU------------GCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 26351 0.7 0.199093
Target:  5'- cACGaCCAUCUacggCGCCGcGCGcGGCgGCCa -3'
miRNA:   3'- -UGC-GGUGGAa---GCGGC-UGCaCCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 24145 0.69 0.215161
Target:  5'- uCGCCACCggccCGCUGAC--GGCCGgCa -3'
miRNA:   3'- uGCGGUGGaa--GCGGCUGcaCCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 18889 0.69 0.215161
Target:  5'- -gGCCgagGCCaUCGaCCG-CGUGcGCCGCCu -3'
miRNA:   3'- ugCGG---UGGaAGC-GGCuGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 25005 0.69 0.220759
Target:  5'- -gGCCACUgcucaagGgCGACGUGGgCGCCg -3'
miRNA:   3'- ugCGGUGGaag----CgGCUGCACCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 31437 0.69 0.22648
Target:  5'- uACGCUcaugcaauccgGCCUg-GCCGAacagGUGGCCGCa -3'
miRNA:   3'- -UGCGG-----------UGGAagCGGCUg---CACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 38578 0.66 0.367709
Target:  5'- gGCGCCugguacaaCUUCGCCGAgGUcaugacucaccacGGCaagCGCCu -3'
miRNA:   3'- -UGCGGug------GAAGCGGCUgCA-------------CCG---GCGG- -5'
26495 5' -61.2 NC_005357.1 + 24953 0.66 0.360168
Target:  5'- uCGCCGCUgUUCGUgcaggcccUGGCGUGGCaccugGCCu -3'
miRNA:   3'- uGCGGUGG-AAGCG--------GCUGCACCGg----CGG- -5'
26495 5' -61.2 NC_005357.1 + 14839 0.68 0.263486
Target:  5'- cACGCCAUCUggCGCCGcCu--GCUGCCg -3'
miRNA:   3'- -UGCGGUGGAa-GCGGCuGcacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 38197 0.68 0.270111
Target:  5'- uACGCCAUCUaCGUcugCGACGaUGGCacggugcgCGCCg -3'
miRNA:   3'- -UGCGGUGGAaGCG---GCUGC-ACCG--------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 14371 0.67 0.297231
Target:  5'- cCGCUguucgagcagACCgUCGCCGACGUguucuucGGCgaCGCCg -3'
miRNA:   3'- uGCGG----------UGGaAGCGGCUGCA-------CCG--GCGG- -5'
26495 5' -61.2 NC_005357.1 + 18961 0.67 0.305254
Target:  5'- -gGgCACCUguuccaCGCCGGCGUGuaCGCg -3'
miRNA:   3'- ugCgGUGGAa-----GCGGCUGCACcgGCGg -5'
26495 5' -61.2 NC_005357.1 + 8686 0.67 0.327971
Target:  5'- uGCGCCGCCcaggugugCGCCG-CGcagauuGCUGCCg -3'
miRNA:   3'- -UGCGGUGGaa------GCGGCuGCac----CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 4182 0.66 0.335026
Target:  5'- -gGCCGCC-UCGauGGCGggcauguUGGCCGCg -3'
miRNA:   3'- ugCGGUGGaAGCggCUGC-------ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 41377 0.66 0.347029
Target:  5'- gACGCCgguucgcggcgacauGCUgcCGCCGGcCGUGGCCuuCCa -3'
miRNA:   3'- -UGCGG---------------UGGaaGCGGCU-GCACCGGc-GG- -5'
26495 5' -61.2 NC_005357.1 + 17981 0.66 0.351915
Target:  5'- gGCGUCAaugUCGCCGA---GGCCGCg -3'
miRNA:   3'- -UGCGGUggaAGCGGCUgcaCCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.