miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 40202 0.69 0.232327
Target:  5'- cGCGCCGCCUgcugCGCguggugcuaccCGACGaGGgCGUCg -3'
miRNA:   3'- -UGCGGUGGAa---GCG-----------GCUGCaCCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8965 0.69 0.232327
Target:  5'- gUGCCGCgaUaGCCaGCGUGGCCGUg -3'
miRNA:   3'- uGCGGUGgaAgCGGcUGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 17065 0.66 0.335817
Target:  5'- gGCGCCugCccggUgGCCGGCuaugcgaacUGGCCgGCCu -3'
miRNA:   3'- -UGCGGugGa---AgCGGCUGc--------ACCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 41377 0.66 0.347029
Target:  5'- gACGCCgguucgcggcgacauGCUgcCGCCGGcCGUGGCCuuCCa -3'
miRNA:   3'- -UGCGG---------------UGGaaGCGGCU-GCACCGGc-GG- -5'
26495 5' -61.2 NC_005357.1 + 30995 0.67 0.297954
Target:  5'- cGCGCCuuaucggcgACCUgcaCGCCGGCuc-GCCGCUg -3'
miRNA:   3'- -UGCGG---------UGGAa--GCGGCUGcacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 989 0.66 0.343798
Target:  5'- -gGCCGCCUggcggUGCCGugGUucaCCGCa -3'
miRNA:   3'- ugCGGUGGAa----GCGGCugCAcc-GGCGg -5'
26495 5' -61.2 NC_005357.1 + 37321 0.66 0.335817
Target:  5'- gGCGCCAgCCgcaccggaCGCUGGgccGGCCGCCu -3'
miRNA:   3'- -UGCGGU-GGaa------GCGGCUgcaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 4158 0.69 0.223032
Target:  5'- cCGcCCACCUugcgCGCCGugGUcgagguguagccaguGGgCGCCg -3'
miRNA:   3'- uGC-GGUGGAa---GCGGCugCA---------------CCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18084 0.66 0.343798
Target:  5'- -gGCCGCCgaaGCCGGCGcgaaccaGGaCGCCu -3'
miRNA:   3'- ugCGGUGGaagCGGCUGCa------CCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32303 0.66 0.343798
Target:  5'- uGCGCgACCUcaUCGCCGcCaucaaGGCCGgCg -3'
miRNA:   3'- -UGCGgUGGA--AGCGGCuGca---CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 35063 0.69 0.220759
Target:  5'- cCGCCGCUggacgaacgaCGCCGAgGUcgaGGCCGCg -3'
miRNA:   3'- uGCGGUGGaa--------GCGGCUgCA---CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 21735 0.69 0.215161
Target:  5'- gAUGCCACCguugggCGCgGccGCGUccacauaggacaGGCCGCCc -3'
miRNA:   3'- -UGCGGUGGaa----GCGgC--UGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 35985 0.7 0.209685
Target:  5'- gGCGaCGCCUUCGCgGGCGgUGGUguCGCg -3'
miRNA:   3'- -UGCgGUGGAAGCGgCUGC-ACCG--GCGg -5'
26495 5' -61.2 NC_005357.1 + 25762 0.66 0.368554
Target:  5'- cGCGCUGCUgggCGgCGGCaacgaUGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaa-GCgGCUGc----ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 31294 0.66 0.360168
Target:  5'- aGCGaaGCCUggCGaCCG-CGUGGUgGCCc -3'
miRNA:   3'- -UGCggUGGAa-GC-GGCuGCACCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 6630 0.66 0.360168
Target:  5'- cCGCCAgCUUCGCgCG-CuUGGCCGg- -3'
miRNA:   3'- uGCGGUgGAAGCG-GCuGcACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 23358 0.66 0.360168
Target:  5'- uCGCCGCCgaugaacaCGgUGGCGUGcCCGCUg -3'
miRNA:   3'- uGCGGUGGaa------GCgGCUGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19069 0.66 0.343798
Target:  5'- aGCGUguCCU-CGCCGAgGUcacgcgauugcaGGCCgGCCu -3'
miRNA:   3'- -UGCGguGGAaGCGGCUgCA------------CCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 18751 0.71 0.156616
Target:  5'- cGCGaCCACCUuuUUGCCGGCGauuucuuccaucgUcagcgucgaGGCCGCCa -3'
miRNA:   3'- -UGC-GGUGGA--AGCGGCUGC-------------A---------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 16038 0.72 0.151669
Target:  5'- -gGCCugCcaguuguaggccagUUCGCgcACGUGGCCGCCg -3'
miRNA:   3'- ugCGGugG--------------AAGCGgcUGCACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.