miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 31294 0.66 0.360168
Target:  5'- aGCGaaGCCUggCGaCCG-CGUGGUgGCCc -3'
miRNA:   3'- -UGCggUGGAa-GC-GGCuGCACCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 6630 0.66 0.360168
Target:  5'- cCGCCAgCUUCGCgCG-CuUGGCCGg- -3'
miRNA:   3'- uGCGGUgGAAGCG-GCuGcACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 23358 0.66 0.360168
Target:  5'- uCGCCGCCgaugaacaCGgUGGCGUGcCCGCUg -3'
miRNA:   3'- uGCGGUGGaa------GCgGCUGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 24953 0.66 0.360168
Target:  5'- uCGCCGCUgUUCGUgcaggcccUGGCGUGGCaccugGCCu -3'
miRNA:   3'- uGCGGUGG-AAGCG--------GCUGCACCGg----CGG- -5'
26495 5' -61.2 NC_005357.1 + 20149 0.66 0.351915
Target:  5'- gACGCCguggucuaucACCaUUCGCUGAC--GGCCGgCg -3'
miRNA:   3'- -UGCGG----------UGG-AAGCGGCUGcaCCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 17981 0.66 0.351915
Target:  5'- gGCGUCAaugUCGCCGA---GGCCGCg -3'
miRNA:   3'- -UGCGGUggaAGCGGCUgcaCCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 12672 0.66 0.349466
Target:  5'- cGCGCCuggcagcagccgagGCCgaguUCuaCGGCGUGGCCGa- -3'
miRNA:   3'- -UGCGG--------------UGGa---AGcgGCUGCACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 10996 0.66 0.34784
Target:  5'- cACGCCGCagaucguggcgUCGCCGuugauggggauauaGCGcGGuuGCCa -3'
miRNA:   3'- -UGCGGUGga---------AGCGGC--------------UGCaCCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 41377 0.66 0.347029
Target:  5'- gACGCCgguucgcggcgacauGCUgcCGCCGGcCGUGGCCuuCCa -3'
miRNA:   3'- -UGCGG---------------UGGaaGCGGCU-GCACCGGc-GG- -5'
26495 5' -61.2 NC_005357.1 + 989 0.66 0.343798
Target:  5'- -gGCCGCCUggcggUGCCGugGUucaCCGCa -3'
miRNA:   3'- ugCGGUGGAa----GCGGCugCAcc-GGCGg -5'
26495 5' -61.2 NC_005357.1 + 18084 0.66 0.343798
Target:  5'- -gGCCGCCgaaGCCGGCGcgaaccaGGaCGCCu -3'
miRNA:   3'- ugCGGUGGaagCGGCUGCa------CCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32303 0.66 0.343798
Target:  5'- uGCGCgACCUcaUCGCCGcCaucaaGGCCGgCg -3'
miRNA:   3'- -UGCGgUGGA--AGCGGCuGca---CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 19069 0.66 0.343798
Target:  5'- aGCGUguCCU-CGCCGAgGUcacgcgauugcaGGCCgGCCu -3'
miRNA:   3'- -UGCGguGGAaGCGGCUgCA------------CCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 8229 0.66 0.335817
Target:  5'- uGCGCgGCCgugcccUCGUCGGCGaaGUCGCUg -3'
miRNA:   3'- -UGCGgUGGa-----AGCGGCUGCacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 37673 0.66 0.335817
Target:  5'- aACGCCGagaaCaUCGCgGcCGUGGCCGa- -3'
miRNA:   3'- -UGCGGUg---GaAGCGgCuGCACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 11797 0.66 0.335817
Target:  5'- uGCGCC-CUcauucgCGCCGGC-UGGUCGCa -3'
miRNA:   3'- -UGCGGuGGaa----GCGGCUGcACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 17065 0.66 0.335817
Target:  5'- gGCGCCugCccggUgGCCGGCuaugcgaacUGGCCgGCCu -3'
miRNA:   3'- -UGCGGugGa---AgCGGCUGc--------ACCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 37321 0.66 0.335817
Target:  5'- gGCGCCAgCCgcaccggaCGCUGGgccGGCCGCCu -3'
miRNA:   3'- -UGCGGU-GGaa------GCGGCUgcaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 4182 0.66 0.335026
Target:  5'- -gGCCGCC-UCGauGGCGggcauguUGGCCGCg -3'
miRNA:   3'- ugCGGUGGaAGCggCUGC-------ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 4799 0.66 0.335026
Target:  5'- cACGCCGgCUggcgCugcgggauugcugGCCGGCGacaGGUCGCCg -3'
miRNA:   3'- -UGCGGUgGAa---G-------------CGGCUGCa--CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.