miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 16647 0.68 0.224248
Target:  5'- -gCGCCGCGcGCaucGCGGCCaucguugCCGCCGc -3'
miRNA:   3'- caGUGGCGCuCG---CGCCGGa------GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 22223 0.68 0.207628
Target:  5'- --gGCCGCGGGCGCuGCCaagACCGAg -3'
miRNA:   3'- cagUGGCGCUCGCGcCGGaggUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 8735 0.68 0.235946
Target:  5'- --uGCCcgGCGGGCGCGGCg-CUACCGu -3'
miRNA:   3'- cagUGG--CGCUCGCGCCGgaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 30599 0.68 0.22945
Target:  5'- --aACCGCG-GCGCGGCCggucuguUCCAguCCGu -3'
miRNA:   3'- cagUGGCGCuCGCGCCGG-------AGGU--GGCu -5'
26496 3' -62.4 NC_005357.1 + 14901 0.68 0.218026
Target:  5'- gGUCugCGCG-GCGaucugcugcuggcCGGCCUCaaguGCCGAc -3'
miRNA:   3'- -CAGugGCGCuCGC-------------GCCGGAGg---UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 3875 0.68 0.230034
Target:  5'- cGUCGCUGUaGGccGCGCuGCCgucgCCGCCGAa -3'
miRNA:   3'- -CAGUGGCG-CU--CGCGcCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 19761 0.68 0.207628
Target:  5'- uGUUGCCGgccaCGAG-GCGGUCUUCACUGAu -3'
miRNA:   3'- -CAGUGGC----GCUCgCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 384 0.69 0.187132
Target:  5'- --uGCCGauuGAGCGCGGCCagCGCgCGAc -3'
miRNA:   3'- cagUGGCg--CUCGCGCCGGagGUG-GCU- -5'
26496 3' -62.4 NC_005357.1 + 21153 0.69 0.182294
Target:  5'- cGUguCCGCGcccugguucaacAGCGCGGCCUgCugCGc -3'
miRNA:   3'- -CAguGGCGC------------UCGCGCCGGAgGugGCu -5'
26496 3' -62.4 NC_005357.1 + 1303 0.69 0.197147
Target:  5'- -cCGCCGCGcccagGGCGaCGGCCaCCagGCCGAc -3'
miRNA:   3'- caGUGGCGC-----UCGC-GCCGGaGG--UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 17297 0.69 0.202329
Target:  5'- -gCGCCGCGGGCGCG-CaUCCAuuCCGGc -3'
miRNA:   3'- caGUGGCGCUCGCGCcGgAGGU--GGCU- -5'
26496 3' -62.4 NC_005357.1 + 1706 0.69 0.202329
Target:  5'- uUCGCCGUGGGC-CGGCgUgCCGgCGAg -3'
miRNA:   3'- cAGUGGCGCUCGcGCCGgA-GGUgGCU- -5'
26496 3' -62.4 NC_005357.1 + 12009 0.69 0.202329
Target:  5'- cGUCgGCCaGC-AGCGCGGCCguggCCGgCGAg -3'
miRNA:   3'- -CAG-UGG-CGcUCGCGCCGGa---GGUgGCU- -5'
26496 3' -62.4 NC_005357.1 + 37792 0.69 0.202329
Target:  5'- aUgGCCGaCGcAGCGUGGCCcagcauccCCGCCGAc -3'
miRNA:   3'- cAgUGGC-GC-UCGCGCCGGa-------GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 17427 0.69 0.197147
Target:  5'- cGUCGCCcuUGAGCaGUGGCC-CCGCCa- -3'
miRNA:   3'- -CAGUGGc-GCUCG-CGCCGGaGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 14590 0.69 0.192082
Target:  5'- --aGCaGCG-GCGCGGCCggcgCCACCGc -3'
miRNA:   3'- cagUGgCGCuCGCGCCGGa---GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14917 0.69 0.192082
Target:  5'- --gACCGCGccgagaAGCugGCGGCCgaggCCGCCGGc -3'
miRNA:   3'- cagUGGCGC------UCG--CGCCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 39874 0.7 0.151033
Target:  5'- --aGCCGgcaauuaCGAGCGCGGCCcCUACCGc -3'
miRNA:   3'- cagUGGC-------GCUCGCGCCGGaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33204 0.7 0.167994
Target:  5'- --uGCCGcCGGGCGCGccgcagaacgugcGCCgcgCCGCCGAg -3'
miRNA:   3'- cagUGGC-GCUCGCGC-------------CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27701 0.7 0.168439
Target:  5'- --gGCCGCGcgccGGCaGCGGCUcgCCGCCGGu -3'
miRNA:   3'- cagUGGCGC----UCG-CGCCGGa-GGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.