miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 17427 0.69 0.197147
Target:  5'- cGUCGCCcuUGAGCaGUGGCC-CCGCCa- -3'
miRNA:   3'- -CAGUGGc-GCUCG-CGCCGGaGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 37792 0.69 0.202329
Target:  5'- aUgGCCGaCGcAGCGUGGCCcagcauccCCGCCGAc -3'
miRNA:   3'- cAgUGGC-GC-UCGCGCCGGa-------GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 22934 0.68 0.224248
Target:  5'- -cCACgGUucGCaGCGGCCUgCCACCGGc -3'
miRNA:   3'- caGUGgCGcuCG-CGCCGGA-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 22223 0.68 0.207628
Target:  5'- --gGCCGCGGGCGCuGCCaagACCGAg -3'
miRNA:   3'- cagUGGCGCUCGCGcCGGaggUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 29420 0.68 0.207628
Target:  5'- -cCACUGCGcuGCGCGGCCUgUACgaGAa -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGGAgGUGg-CU- -5'
26496 3' -62.4 NC_005357.1 + 6077 0.68 0.224248
Target:  5'- -aCACCGCcucgaagucgucGAGCGCGGCCUUgCGCa-- -3'
miRNA:   3'- caGUGGCG------------CUCGCGCCGGAG-GUGgcu -5'
26496 3' -62.4 NC_005357.1 + 16647 0.68 0.224248
Target:  5'- -gCGCCGCGcGCaucGCGGCCaucguugCCGCCGc -3'
miRNA:   3'- caGUGGCGCuCG---CGCCGGa------GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 30599 0.68 0.22945
Target:  5'- --aACCGCG-GCGCGGCCggucuguUCCAguCCGu -3'
miRNA:   3'- cagUGGCGCuCGCGCCGG-------AGGU--GGCu -5'
26496 3' -62.4 NC_005357.1 + 8735 0.68 0.235946
Target:  5'- --uGCCcgGCGGGCGCGGCg-CUACCGu -3'
miRNA:   3'- cagUGG--CGCUCGCGCCGgaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14901 0.68 0.218026
Target:  5'- gGUCugCGCG-GCGaucugcugcuggcCGGCCUCaaguGCCGAc -3'
miRNA:   3'- -CAGugGCGCuCGC-------------GCCGGAGg---UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 19761 0.68 0.207628
Target:  5'- uGUUGCCGgccaCGAG-GCGGUCUUCACUGAu -3'
miRNA:   3'- -CAGUGGC----GCUCgCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 3875 0.68 0.230034
Target:  5'- cGUCGCUGUaGGccGCGCuGCCgucgCCGCCGAa -3'
miRNA:   3'- -CAGUGGCG-CU--CGCGcCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27486 0.67 0.248151
Target:  5'- -gCACCacGCGAGgaugccgGCGGCCUCgGCCGc -3'
miRNA:   3'- caGUGG--CGCUCg------CGCCGGAGgUGGCu -5'
26496 3' -62.4 NC_005357.1 + 23540 0.67 0.241984
Target:  5'- -gCGCaCGCGGuCGaUGGCCUCgGCCGAc -3'
miRNA:   3'- caGUG-GCGCUcGC-GCCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 13042 0.67 0.266771
Target:  5'- cGUCAUCGCguugcuuGAGUGCGGCCgUCUGCa-- -3'
miRNA:   3'- -CAGUGGCG-------CUCGCGCCGG-AGGUGgcu -5'
26496 3' -62.4 NC_005357.1 + 13759 0.67 0.241984
Target:  5'- -gCGCCGCGcuGGCGaGGCCgccggCACCGAu -3'
miRNA:   3'- caGUGGCGC--UCGCgCCGGag---GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14335 0.67 0.274124
Target:  5'- aUCACCGCGAcggaauacgacGcCGCGGCCaccugcCCGCUGu -3'
miRNA:   3'- cAGUGGCGCU-----------C-GCGCCGGa-----GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 26165 0.67 0.273449
Target:  5'- gGUgGCCGCGcGCGaGGCCaacgccaUCCGCCa- -3'
miRNA:   3'- -CAgUGGCGCuCGCgCCGG-------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 24030 0.67 0.248151
Target:  5'- uUCGCCGa---CGUGGCCgCCACCGGc -3'
miRNA:   3'- cAGUGGCgcucGCGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 16150 0.67 0.241984
Target:  5'- aUCGCgCGCGAuGCGCGaGCCgaCCagGCCGGc -3'
miRNA:   3'- cAGUG-GCGCU-CGCGC-CGGa-GG--UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.