Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26496 | 3' | -62.4 | NC_005357.1 | + | 18064 | 0.66 | 0.280948 |
Target: 5'- -cCGgCGCgGGGUGCGuGCUgggCCGCCGAa -3' miRNA: 3'- caGUgGCG-CUCGCGC-CGGa--GGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 17883 | 0.66 | 0.280948 |
Target: 5'- aUCGCCGCGcuGCgcgaccacGCGGUCaUCCACCu- -3' miRNA: 3'- cAGUGGCGCu-CG--------CGCCGG-AGGUGGcu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 18533 | 0.66 | 0.280948 |
Target: 5'- --aGCCGCGGGCGUGGCgcacUUCCuuggcguauuCCGGg -3' miRNA: 3'- cagUGGCGCUCGCGCCG----GAGGu---------GGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 10689 | 0.66 | 0.287907 |
Target: 5'- cGUCuugACgGC-AGCGCgcacGGCCUCgGCCGAu -3' miRNA: 3'- -CAG---UGgCGcUCGCG----CCGGAGgUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 35199 | 0.66 | 0.295 |
Target: 5'- aUCGCCGaggguGAGCGCGGCgCagaugCUGCCGu -3' miRNA: 3'- cAGUGGCg----CUCGCGCCG-Ga----GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 5349 | 0.66 | 0.295 |
Target: 5'- -gCAUCGCGcuGCGUGGCCgCCugCa- -3' miRNA: 3'- caGUGGCGCu-CGCGCCGGaGGugGcu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 38471 | 0.66 | 0.295 |
Target: 5'- -cUACCGCG-GCuaCGGUUUCCGCCGu -3' miRNA: 3'- caGUGGCGCuCGc-GCCGGAGGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 17067 | 0.66 | 0.297876 |
Target: 5'- uUCACCucGCGcacgaaggcgaagccGGCGCGGuUCUCgGCCGGg -3' miRNA: 3'- cAGUGG--CGC---------------UCGCGCC-GGAGgUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33853 | 0.66 | 0.302229 |
Target: 5'- --gGCCGCacGCGCGGCCUacgaCGCCc- -3' miRNA: 3'- cagUGGCGcuCGCGCCGGAg---GUGGcu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 2944 | 0.66 | 0.302229 |
Target: 5'- -aCACCGCGucGCGCGGCa--CGUCGAg -3' miRNA: 3'- caGUGGCGCu-CGCGCCGgagGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 19326 | 0.66 | 0.302229 |
Target: 5'- uGUCGCCGUGGGCGCcGCCgUUgGCguCGGg -3' miRNA: 3'- -CAGUGGCGCUCGCGcCGG-AGgUG--GCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33467 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33395 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 8578 | 0.66 | 0.302229 |
Target: 5'- cGUCguagGCCGCGcGUGCGGCCUgguGCUGGa -3' miRNA: 3'- -CAG----UGGCGCuCGCGCCGGAgg-UGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33347 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33299 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33251 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33203 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 10343 | 0.66 | 0.302229 |
Target: 5'- cGUCGCUGCG-GCGUGuGCCUUCuucuCCc- -3' miRNA: 3'- -CAGUGGCGCuCGCGC-CGGAGGu---GGcu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 23338 | 0.66 | 0.302229 |
Target: 5'- --aGCCGCGcaauuCGaCGGCCUcgCCGCCGAu -3' miRNA: 3'- cagUGGCGCuc---GC-GCCGGA--GGUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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