miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 23862 1.08 0.000188
Target:  5'- cGUCACCGCGAGCGCGGCCUCCACCGAc -3'
miRNA:   3'- -CAGUGGCGCUCGCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24030 0.67 0.248151
Target:  5'- uUCGCCGa---CGUGGCCgCCACCGGc -3'
miRNA:   3'- cAGUGGCgcucGCGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24435 0.7 0.168439
Target:  5'- uGUCgguGCCGC--GCGCGGCCUCggcgacauugaCGCCGAc -3'
miRNA:   3'- -CAG---UGGCGcuCGCGCCGGAG-----------GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24736 0.79 0.036619
Target:  5'- -cCACCGCGccuGCGCGGCCUCgACCc- -3'
miRNA:   3'- caGUGGCGCu--CGCGCCGGAGgUGGcu -5'
26496 3' -62.4 NC_005357.1 + 25617 0.66 0.317094
Target:  5'- -cCACgGCG-GCGCGGUCgccagcagcgcgUCCACCu- -3'
miRNA:   3'- caGUGgCGCuCGCGCCGG------------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 26165 0.67 0.273449
Target:  5'- gGUgGCCGCGcGCGaGGCCaacgccaUCCGCCa- -3'
miRNA:   3'- -CAgUGGCGCuCGCgCCGG-------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 27486 0.67 0.248151
Target:  5'- -gCACCacGCGAGgaugccgGCGGCCUCgGCCGc -3'
miRNA:   3'- caGUGG--CGCUCg------CGCCGGAGgUGGCu -5'
26496 3' -62.4 NC_005357.1 + 27659 0.66 0.317094
Target:  5'- -cUACCcagGUGGGCGCcaCCUCCACCGu -3'
miRNA:   3'- caGUGG---CGCUCGCGccGGAGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 27701 0.7 0.168439
Target:  5'- --gGCCGCGcgccGGCaGCGGCUcgCCGCCGGu -3'
miRNA:   3'- cagUGGCGC----UCG-CGCCGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 28567 0.66 0.309594
Target:  5'- -cCAUCGCG-GCGCGcacGUCggCCACCGGc -3'
miRNA:   3'- caGUGGCGCuCGCGC---CGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 28883 0.66 0.308851
Target:  5'- cUCGCUGCuGGCGUaguugcuGGCCgUCGCCGAc -3'
miRNA:   3'- cAGUGGCGcUCGCG-------CCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 29420 0.68 0.207628
Target:  5'- -cCACUGCGcuGCGCGGCCUgUACgaGAa -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGGAgGUGg-CU- -5'
26496 3' -62.4 NC_005357.1 + 29863 0.74 0.078504
Target:  5'- aUCGCCGCGcAGCGCgaGGCCggcaagaaaUUCACCGAc -3'
miRNA:   3'- cAGUGGCGC-UCGCG--CCGG---------AGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 30599 0.68 0.22945
Target:  5'- --aACCGCG-GCGCGGCCggucuguUCCAguCCGu -3'
miRNA:   3'- cagUGGCGCuCGCGCCGG-------AGGU--GGCu -5'
26496 3' -62.4 NC_005357.1 + 32345 0.66 0.317094
Target:  5'- -cCGCCGCccaggucGCuGCGGUCgCCGCCGAg -3'
miRNA:   3'- caGUGGCGcu-----CG-CGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 33114 0.66 0.309594
Target:  5'- -gCGCCGaCGuGCGCcGCCaggUCGCCGAg -3'
miRNA:   3'- caGUGGC-GCuCGCGcCGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 33203 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33204 0.7 0.167994
Target:  5'- --uGCCGcCGGGCGCGccgcagaacgugcGCCgcgCCGCCGAg -3'
miRNA:   3'- cagUGGC-GCUCGCGC-------------CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 33251 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33299 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.