Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 33347 | 0.66 | 0.302229 |
|
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 33395 | 0.66 | 0.302229 |
|
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 33467 | 0.66 | 0.302229 |
|
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 33853 | 0.66 | 0.302229 |
|
Target: 5'- --gGCCGCacGCGCGGCCUacgaCGCCc- -3' miRNA: 3'- cagUGGCGcuCGCGCCGGAg---GUGGcu -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 35199 | 0.66 | 0.295 |
|
Target: 5'- aUCGCCGaggguGAGCGCGGCgCagaugCUGCCGu -3' miRNA: 3'- cAGUGGCg----CUCGCGCCG-Ga----GGUGGCu -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 37792 | 0.69 | 0.202329 |
|
Target: 5'- aUgGCCGaCGcAGCGUGGCCcagcauccCCGCCGAc -3' miRNA: 3'- cAgUGGC-GC-UCGCGCCGGa-------GGUGGCU- -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 38471 | 0.66 | 0.295 |
|
Target: 5'- -cUACCGCG-GCuaCGGUUUCCGCCGu -3' miRNA: 3'- caGUGGCGCuCGc-GCCGGAGGUGGCu -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 39874 | 0.7 | 0.151033 |
|
Target: 5'- --aGCCGgcaauuaCGAGCGCGGCCcCUACCGc -3' miRNA: 3'- cagUGGC-------GCUCGCGCCGGaGGUGGCu -5' |
|||||||
| 26496 | 3' | -62.4 | NC_005357.1 | + | 40420 | 0.73 | 0.103562 |
|
Target: 5'- uUCGCCaGCGAGCGCcugGGCCUcaagaucagCCACUGGc -3' miRNA: 3'- cAGUGG-CGCUCGCG---CCGGA---------GGUGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home