miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 27701 0.7 0.168439
Target:  5'- --gGCCGCGcgccGGCaGCGGCUcgCCGCCGGu -3'
miRNA:   3'- cagUGGCGC----UCG-CGCCGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27659 0.66 0.317094
Target:  5'- -cUACCcagGUGGGCGCcaCCUCCACCGu -3'
miRNA:   3'- caGUGG---CGCUCGCGccGGAGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 27486 0.67 0.248151
Target:  5'- -gCACCacGCGAGgaugccgGCGGCCUCgGCCGc -3'
miRNA:   3'- caGUGG--CGCUCg------CGCCGGAGgUGGCu -5'
26496 3' -62.4 NC_005357.1 + 26165 0.67 0.273449
Target:  5'- gGUgGCCGCGcGCGaGGCCaacgccaUCCGCCa- -3'
miRNA:   3'- -CAgUGGCGCuCGCgCCGG-------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 25617 0.66 0.317094
Target:  5'- -cCACgGCG-GCGCGGUCgccagcagcgcgUCCACCu- -3'
miRNA:   3'- caGUGgCGCuCGCGCCGG------------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 24736 0.79 0.036619
Target:  5'- -cCACCGCGccuGCGCGGCCUCgACCc- -3'
miRNA:   3'- caGUGGCGCu--CGCGCCGGAGgUGGcu -5'
26496 3' -62.4 NC_005357.1 + 24435 0.7 0.168439
Target:  5'- uGUCgguGCCGC--GCGCGGCCUCggcgacauugaCGCCGAc -3'
miRNA:   3'- -CAG---UGGCGcuCGCGCCGGAG-----------GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24030 0.67 0.248151
Target:  5'- uUCGCCGa---CGUGGCCgCCACCGGc -3'
miRNA:   3'- cAGUGGCgcucGCGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 23862 1.08 0.000188
Target:  5'- cGUCACCGCGAGCGCGGCCUCCACCGAc -3'
miRNA:   3'- -CAGUGGCGCUCGCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 23540 0.67 0.241984
Target:  5'- -gCGCaCGCGGuCGaUGGCCUCgGCCGAc -3'
miRNA:   3'- caGUG-GCGCUcGC-GCCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 23338 0.66 0.302229
Target:  5'- --aGCCGCGcaauuCGaCGGCCUcgCCGCCGAu -3'
miRNA:   3'- cagUGGCGCuc---GC-GCCGGA--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 22934 0.68 0.224248
Target:  5'- -cCACgGUucGCaGCGGCCUgCCACCGGc -3'
miRNA:   3'- caGUGgCGcuCG-CGCCGGA-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 22223 0.68 0.207628
Target:  5'- --gGCCGCGGGCGCuGCCaagACCGAg -3'
miRNA:   3'- cagUGGCGCUCGCGcCGGaggUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 21739 0.73 0.10075
Target:  5'- -cCACCGuUGGGCGCGGCCgcgUCCACauaGGa -3'
miRNA:   3'- caGUGGC-GCUCGCGCCGG---AGGUGg--CU- -5'
26496 3' -62.4 NC_005357.1 + 21153 0.69 0.182294
Target:  5'- cGUguCCGCGcccugguucaacAGCGCGGCCUgCugCGc -3'
miRNA:   3'- -CAguGGCGC------------UCGCGCCGGAgGugGCu -5'
26496 3' -62.4 NC_005357.1 + 19761 0.68 0.207628
Target:  5'- uGUUGCCGgccaCGAG-GCGGUCUUCACUGAu -3'
miRNA:   3'- -CAGUGGC----GCUCgCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 19326 0.66 0.302229
Target:  5'- uGUCGCCGUGGGCGCcGCCgUUgGCguCGGg -3'
miRNA:   3'- -CAGUGGCGCUCGCGcCGG-AGgUG--GCU- -5'
26496 3' -62.4 NC_005357.1 + 18533 0.66 0.280948
Target:  5'- --aGCCGCGGGCGUGGCgcacUUCCuuggcguauuCCGGg -3'
miRNA:   3'- cagUGGCGCUCGCGCCG----GAGGu---------GGCU- -5'
26496 3' -62.4 NC_005357.1 + 18462 0.7 0.164035
Target:  5'- gGUCGCgGCGccggcGGCGuCGGCCgauucgUCCACCGu -3'
miRNA:   3'- -CAGUGgCGC-----UCGC-GCCGG------AGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 18064 0.66 0.280948
Target:  5'- -cCGgCGCgGGGUGCGuGCUgggCCGCCGAa -3'
miRNA:   3'- caGUgGCG-CUCGCGC-CGGa--GGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.