miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 17883 0.66 0.280948
Target:  5'- aUCGCCGCGcuGCgcgaccacGCGGUCaUCCACCu- -3'
miRNA:   3'- cAGUGGCGCu-CG--------CGCCGG-AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 17427 0.69 0.197147
Target:  5'- cGUCGCCcuUGAGCaGUGGCC-CCGCCa- -3'
miRNA:   3'- -CAGUGGc-GCUCG-CGCCGGaGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 17297 0.69 0.202329
Target:  5'- -gCGCCGCGGGCGCG-CaUCCAuuCCGGc -3'
miRNA:   3'- caGUGGCGCUCGCGCcGgAGGU--GGCU- -5'
26496 3' -62.4 NC_005357.1 + 17067 0.66 0.297876
Target:  5'- uUCACCucGCGcacgaaggcgaagccGGCGCGGuUCUCgGCCGGg -3'
miRNA:   3'- cAGUGG--CGC---------------UCGCGCC-GGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 16725 0.66 0.31483
Target:  5'- -cCGCCGCGgggcugguaugagcAGCGuuGCCgaaaUCCGCCGGc -3'
miRNA:   3'- caGUGGCGC--------------UCGCgcCGG----AGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 16647 0.68 0.224248
Target:  5'- -gCGCCGCGcGCaucGCGGCCaucguugCCGCCGc -3'
miRNA:   3'- caGUGGCGCuCG---CGCCGGa------GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 16150 0.67 0.241984
Target:  5'- aUCGCgCGCGAuGCGCGaGCCgaCCagGCCGGc -3'
miRNA:   3'- cAGUG-GCGCU-CGCGC-CGGa-GG--UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14917 0.69 0.192082
Target:  5'- --gACCGCGccgagaAGCugGCGGCCgaggCCGCCGGc -3'
miRNA:   3'- cagUGGCGC------UCG--CGCCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14901 0.68 0.218026
Target:  5'- gGUCugCGCG-GCGaucugcugcuggcCGGCCUCaaguGCCGAc -3'
miRNA:   3'- -CAGugGCGCuCGC-------------GCCGGAGg---UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14590 0.69 0.192082
Target:  5'- --aGCaGCG-GCGCGGCCggcgCCACCGc -3'
miRNA:   3'- cagUGgCGCuCGCGCCGGa---GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14335 0.67 0.274124
Target:  5'- aUCACCGCGAcggaauacgacGcCGCGGCCaccugcCCGCUGu -3'
miRNA:   3'- cAGUGGCGCU-----------C-GCGCCGGa-----GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14307 0.66 0.317094
Target:  5'- cGUCGuuGCugaacuGGCGCGcGCCUUgGCUGAa -3'
miRNA:   3'- -CAGUggCGc-----UCGCGC-CGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 13759 0.67 0.241984
Target:  5'- -gCGCCGCGcuGGCGaGGCCgccggCACCGAu -3'
miRNA:   3'- caGUGGCGC--UCGCgCCGGag---GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 13042 0.67 0.266771
Target:  5'- cGUCAUCGCguugcuuGAGUGCGGCCgUCUGCa-- -3'
miRNA:   3'- -CAGUGGCG-------CUCGCGCCGG-AGGUGgcu -5'
26496 3' -62.4 NC_005357.1 + 12009 0.69 0.202329
Target:  5'- cGUCgGCCaGC-AGCGCGGCCguggCCGgCGAg -3'
miRNA:   3'- -CAG-UGG-CGcUCGCGCCGGa---GGUgGCU- -5'
26496 3' -62.4 NC_005357.1 + 10878 0.77 0.047303
Target:  5'- gGUCGgCGCGAugcGCGCGGCguauucCUCCACCGGa -3'
miRNA:   3'- -CAGUgGCGCU---CGCGCCG------GAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 10689 0.66 0.287907
Target:  5'- cGUCuugACgGC-AGCGCgcacGGCCUCgGCCGAu -3'
miRNA:   3'- -CAG---UGgCGcUCGCG----CCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 10343 0.66 0.302229
Target:  5'- cGUCGCUGCG-GCGUGuGCCUUCuucuCCc- -3'
miRNA:   3'- -CAGUGGCGCuCGCGC-CGGAGGu---GGcu -5'
26496 3' -62.4 NC_005357.1 + 8966 0.66 0.309594
Target:  5'- --uGCCGCGAuagccaGCGUGGCCgu-GCCGGa -3'
miRNA:   3'- cagUGGCGCU------CGCGCCGGaggUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 8735 0.68 0.235946
Target:  5'- --uGCCcgGCGGGCGCGGCg-CUACCGu -3'
miRNA:   3'- cagUGG--CGCUCGCGCCGgaGGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.