miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 8735 0.68 0.235946
Target:  5'- --uGCCcgGCGGGCGCGGCg-CUACCGu -3'
miRNA:   3'- cagUGG--CGCUCGCGCCGgaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 13759 0.67 0.241984
Target:  5'- -gCGCCGCGcuGGCGaGGCCgccggCACCGAu -3'
miRNA:   3'- caGUGGCGC--UCGCgCCGGag---GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 16150 0.67 0.241984
Target:  5'- aUCGCgCGCGAuGCGCGaGCCgaCCagGCCGGc -3'
miRNA:   3'- cAGUG-GCGCU-CGCGC-CGGa-GG--UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24030 0.67 0.248151
Target:  5'- uUCGCCGa---CGUGGCCgCCACCGGc -3'
miRNA:   3'- cAGUGGCgcucGCGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 26165 0.67 0.273449
Target:  5'- gGUgGCCGCGcGCGaGGCCaacgccaUCCGCCa- -3'
miRNA:   3'- -CAgUGGCGCuCGCgCCGG-------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 14335 0.67 0.274124
Target:  5'- aUCACCGCGAcggaauacgacGcCGCGGCCaccugcCCGCUGu -3'
miRNA:   3'- cAGUGGCGCU-----------C-GCGCCGGa-----GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 18533 0.66 0.280948
Target:  5'- --aGCCGCGGGCGUGGCgcacUUCCuuggcguauuCCGGg -3'
miRNA:   3'- cagUGGCGCUCGCGCCG----GAGGu---------GGCU- -5'
26496 3' -62.4 NC_005357.1 + 17883 0.66 0.280948
Target:  5'- aUCGCCGCGcuGCgcgaccacGCGGUCaUCCACCu- -3'
miRNA:   3'- cAGUGGCGCu-CG--------CGCCGG-AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 6077 0.68 0.224248
Target:  5'- -aCACCGCcucgaagucgucGAGCGCGGCCUUgCGCa-- -3'
miRNA:   3'- caGUGGCG------------CUCGCGCCGGAG-GUGgcu -5'
26496 3' -62.4 NC_005357.1 + 22934 0.68 0.224248
Target:  5'- -cCACgGUucGCaGCGGCCUgCCACCGGc -3'
miRNA:   3'- caGUGgCGcuCG-CGCCGGA-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 22223 0.68 0.207628
Target:  5'- --gGCCGCGGGCGCuGCCaagACCGAg -3'
miRNA:   3'- cagUGGCGCUCGCGcCGGaggUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 29863 0.74 0.078504
Target:  5'- aUCGCCGCGcAGCGCgaGGCCggcaagaaaUUCACCGAc -3'
miRNA:   3'- cAGUGGCGC-UCGCG--CCGG---------AGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 7342 0.73 0.09021
Target:  5'- aUgGCCuuGAGCGCGGCCUCgACCu- -3'
miRNA:   3'- cAgUGGcgCUCGCGCCGGAGgUGGcu -5'
26496 3' -62.4 NC_005357.1 + 40420 0.73 0.103562
Target:  5'- uUCGCCaGCGAGCGCcugGGCCUcaagaucagCCACUGGc -3'
miRNA:   3'- cAGUGG-CGCUCGCG---CCGGA---------GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 39874 0.7 0.151033
Target:  5'- --aGCCGgcaauuaCGAGCGCGGCCcCUACCGc -3'
miRNA:   3'- cagUGGC-------GCUCGCGCCGGaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33204 0.7 0.167994
Target:  5'- --uGCCGcCGGGCGCGccgcagaacgugcGCCgcgCCGCCGAg -3'
miRNA:   3'- cagUGGC-GCUCGCGC-------------CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 384 0.69 0.187132
Target:  5'- --uGCCGauuGAGCGCGGCCagCGCgCGAc -3'
miRNA:   3'- cagUGGCg--CUCGCGCCGGagGUG-GCU- -5'
26496 3' -62.4 NC_005357.1 + 14590 0.69 0.192082
Target:  5'- --aGCaGCG-GCGCGGCCggcgCCACCGc -3'
miRNA:   3'- cagUGgCGCuCGCGCCGGa---GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14917 0.69 0.192082
Target:  5'- --gACCGCGccgagaAGCugGCGGCCgaggCCGCCGGc -3'
miRNA:   3'- cagUGGCGC------UCG--CGCCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 29420 0.68 0.207628
Target:  5'- -cCACUGCGcuGCGCGGCCUgUACgaGAa -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGGAgGUGg-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.