miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 384 0.69 0.187132
Target:  5'- --uGCCGauuGAGCGCGGCCagCGCgCGAc -3'
miRNA:   3'- cagUGGCg--CUCGCGCCGGagGUG-GCU- -5'
26496 3' -62.4 NC_005357.1 + 33853 0.66 0.302229
Target:  5'- --gGCCGCacGCGCGGCCUacgaCGCCc- -3'
miRNA:   3'- cagUGGCGcuCGCGCCGGAg---GUGGcu -5'
26496 3' -62.4 NC_005357.1 + 26165 0.67 0.273449
Target:  5'- gGUgGCCGCGcGCGaGGCCaacgccaUCCGCCa- -3'
miRNA:   3'- -CAgUGGCGCuCGCgCCGG-------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 33204 0.7 0.167994
Target:  5'- --uGCCGcCGGGCGCGccgcagaacgugcGCCgcgCCGCCGAg -3'
miRNA:   3'- cagUGGC-GCUCGCGC-------------CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 5349 0.66 0.295
Target:  5'- -gCAUCGCGcuGCGUGGCCgCCugCa- -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGGaGGugGcu -5'
26496 3' -62.4 NC_005357.1 + 8966 0.66 0.309594
Target:  5'- --uGCCGCGAuagccaGCGUGGCCgu-GCCGGa -3'
miRNA:   3'- cagUGGCGCU------CGCGCCGGaggUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 19326 0.66 0.302229
Target:  5'- uGUCGCCGUGGGCGCcGCCgUUgGCguCGGg -3'
miRNA:   3'- -CAGUGGCGCUCGCGcCGG-AGgUG--GCU- -5'
26496 3' -62.4 NC_005357.1 + 39874 0.7 0.151033
Target:  5'- --aGCCGgcaauuaCGAGCGCGGCCcCUACCGc -3'
miRNA:   3'- cagUGGC-------GCUCGCGCCGGaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 40420 0.73 0.103562
Target:  5'- uUCGCCaGCGAGCGCcugGGCCUcaagaucagCCACUGGc -3'
miRNA:   3'- cAGUGG-CGCUCGCG---CCGGA---------GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14590 0.69 0.192082
Target:  5'- --aGCaGCG-GCGCGGCCggcgCCACCGc -3'
miRNA:   3'- cagUGgCGCuCGCGCCGGa---GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 16647 0.68 0.224248
Target:  5'- -gCGCCGCGcGCaucGCGGCCaucguugCCGCCGc -3'
miRNA:   3'- caGUGGCGCuCG---CGCCGGa------GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 21153 0.69 0.182294
Target:  5'- cGUguCCGCGcccugguucaacAGCGCGGCCUgCugCGc -3'
miRNA:   3'- -CAguGGCGC------------UCGCGCCGGAgGugGCu -5'
26496 3' -62.4 NC_005357.1 + 33467 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33395 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33347 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33299 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33251 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 37792 0.69 0.202329
Target:  5'- aUgGCCGaCGcAGCGUGGCCcagcauccCCGCCGAc -3'
miRNA:   3'- cAgUGGC-GC-UCGCGCCGGa-------GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 19761 0.68 0.207628
Target:  5'- uGUUGCCGgccaCGAG-GCGGUCUUCACUGAu -3'
miRNA:   3'- -CAGUGGC----GCUCgCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14901 0.68 0.218026
Target:  5'- gGUCugCGCG-GCGaucugcugcuggcCGGCCUCaaguGCCGAc -3'
miRNA:   3'- -CAGugGCGCuCGC-------------GCCGGAGg---UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.