miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 27701 0.7 0.168439
Target:  5'- --gGCCGCGcgccGGCaGCGGCUcgCCGCCGGu -3'
miRNA:   3'- cagUGGCGC----UCG-CGCCGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24435 0.7 0.168439
Target:  5'- uGUCgguGCCGC--GCGCGGCCUCggcgacauugaCGCCGAc -3'
miRNA:   3'- -CAG---UGGCGcuCGCGCCGGAG-----------GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 33347 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 21739 0.73 0.10075
Target:  5'- -cCACCGuUGGGCGCGGCCgcgUCCACauaGGa -3'
miRNA:   3'- caGUGGC-GCUCGCGCCGG---AGGUGg--CU- -5'
26496 3' -62.4 NC_005357.1 + 33299 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 19761 0.68 0.207628
Target:  5'- uGUUGCCGgccaCGAG-GCGGUCUUCACUGAu -3'
miRNA:   3'- -CAGUGGC----GCUCgCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14901 0.68 0.218026
Target:  5'- gGUCugCGCG-GCGaucugcugcuggcCGGCCUCaaguGCCGAc -3'
miRNA:   3'- -CAGugGCGCuCGC-------------GCCGGAGg---UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 17067 0.66 0.297876
Target:  5'- uUCACCucGCGcacgaaggcgaagccGGCGCGGuUCUCgGCCGGg -3'
miRNA:   3'- cAGUGG--CGC---------------UCGCGCC-GGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 28567 0.66 0.309594
Target:  5'- -cCAUCGCG-GCGCGcacGUCggCCACCGGc -3'
miRNA:   3'- caGUGGCGCuCGCGC---CGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 25617 0.66 0.317094
Target:  5'- -cCACgGCG-GCGCGGUCgccagcagcgcgUCCACCu- -3'
miRNA:   3'- caGUGgCGCuCGCGCCGG------------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 27659 0.66 0.317094
Target:  5'- -cUACCcagGUGGGCGCcaCCUCCACCGu -3'
miRNA:   3'- caGUGG---CGCUCGCGccGGAGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14307 0.66 0.317094
Target:  5'- cGUCGuuGCugaacuGGCGCGcGCCUUgGCUGAa -3'
miRNA:   3'- -CAGUggCGc-----UCGCGC-CGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 32345 0.66 0.317094
Target:  5'- -cCGCCGCccaggucGCuGCGGUCgCCGCCGAg -3'
miRNA:   3'- caGUGGCGcu-----CG-CGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 38471 0.66 0.295
Target:  5'- -cUACCGCG-GCuaCGGUUUCCGCCGu -3'
miRNA:   3'- caGUGGCGCuCGc-GCCGGAGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 10689 0.66 0.287907
Target:  5'- cGUCuugACgGC-AGCGCgcacGGCCUCgGCCGAu -3'
miRNA:   3'- -CAG---UGgCGcUCGCG----CCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 18064 0.66 0.280948
Target:  5'- -cCGgCGCgGGGUGCGuGCUgggCCGCCGAa -3'
miRNA:   3'- caGUgGCG-CUCGCGC-CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 13042 0.67 0.266771
Target:  5'- cGUCAUCGCguugcuuGAGUGCGGCCgUCUGCa-- -3'
miRNA:   3'- -CAGUGGCG-------CUCGCGCCGG-AGGUGgcu -5'
26496 3' -62.4 NC_005357.1 + 27486 0.67 0.248151
Target:  5'- -gCACCacGCGAGgaugccgGCGGCCUCgGCCGc -3'
miRNA:   3'- caGUGG--CGCUCg------CGCCGGAGgUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33203 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33467 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.