miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 2944 0.66 0.302229
Target:  5'- -aCACCGCGucGCGCGGCa--CGUCGAg -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGgagGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 17067 0.66 0.297876
Target:  5'- uUCACCucGCGcacgaaggcgaagccGGCGCGGuUCUCgGCCGGg -3'
miRNA:   3'- cAGUGG--CGC---------------UCGCGCC-GGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 5349 0.66 0.295
Target:  5'- -gCAUCGCGcuGCGUGGCCgCCugCa- -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGGaGGugGcu -5'
26496 3' -62.4 NC_005357.1 + 38471 0.66 0.295
Target:  5'- -cUACCGCG-GCuaCGGUUUCCGCCGu -3'
miRNA:   3'- caGUGGCGCuCGc-GCCGGAGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 35199 0.66 0.295
Target:  5'- aUCGCCGaggguGAGCGCGGCgCagaugCUGCCGu -3'
miRNA:   3'- cAGUGGCg----CUCGCGCCG-Ga----GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 10689 0.66 0.287907
Target:  5'- cGUCuugACgGC-AGCGCgcacGGCCUCgGCCGAu -3'
miRNA:   3'- -CAG---UGgCGcUCGCG----CCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 18064 0.66 0.280948
Target:  5'- -cCGgCGCgGGGUGCGuGCUgggCCGCCGAa -3'
miRNA:   3'- caGUgGCG-CUCGCGC-CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 17883 0.66 0.280948
Target:  5'- aUCGCCGCGcuGCgcgaccacGCGGUCaUCCACCu- -3'
miRNA:   3'- cAGUGGCGCu-CG--------CGCCGG-AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 18533 0.66 0.280948
Target:  5'- --aGCCGCGGGCGUGGCgcacUUCCuuggcguauuCCGGg -3'
miRNA:   3'- cagUGGCGCUCGCGCCG----GAGGu---------GGCU- -5'
26496 3' -62.4 NC_005357.1 + 14335 0.67 0.274124
Target:  5'- aUCACCGCGAcggaauacgacGcCGCGGCCaccugcCCGCUGu -3'
miRNA:   3'- cAGUGGCGCU-----------C-GCGCCGGa-----GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 26165 0.67 0.273449
Target:  5'- gGUgGCCGCGcGCGaGGCCaacgccaUCCGCCa- -3'
miRNA:   3'- -CAgUGGCGCuCGCgCCGG-------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 13042 0.67 0.266771
Target:  5'- cGUCAUCGCguugcuuGAGUGCGGCCgUCUGCa-- -3'
miRNA:   3'- -CAGUGGCG-------CUCGCGCCGG-AGGUGgcu -5'
26496 3' -62.4 NC_005357.1 + 24030 0.67 0.248151
Target:  5'- uUCGCCGa---CGUGGCCgCCACCGGc -3'
miRNA:   3'- cAGUGGCgcucGCGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27486 0.67 0.248151
Target:  5'- -gCACCacGCGAGgaugccgGCGGCCUCgGCCGc -3'
miRNA:   3'- caGUGG--CGCUCg------CGCCGGAGgUGGCu -5'
26496 3' -62.4 NC_005357.1 + 23540 0.67 0.241984
Target:  5'- -gCGCaCGCGGuCGaUGGCCUCgGCCGAc -3'
miRNA:   3'- caGUG-GCGCUcGC-GCCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 16150 0.67 0.241984
Target:  5'- aUCGCgCGCGAuGCGCGaGCCgaCCagGCCGGc -3'
miRNA:   3'- cAGUG-GCGCU-CGCGC-CGGa-GG--UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 13759 0.67 0.241984
Target:  5'- -gCGCCGCGcuGGCGaGGCCgccggCACCGAu -3'
miRNA:   3'- caGUGGCGC--UCGCgCCGGag---GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 8735 0.68 0.235946
Target:  5'- --uGCCcgGCGGGCGCGGCg-CUACCGu -3'
miRNA:   3'- cagUGG--CGCUCGCGCCGgaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 3875 0.68 0.230034
Target:  5'- cGUCGCUGUaGGccGCGCuGCCgucgCCGCCGAa -3'
miRNA:   3'- -CAGUGGCG-CU--CGCGcCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 30599 0.68 0.22945
Target:  5'- --aACCGCG-GCGCGGCCggucuguUCCAguCCGu -3'
miRNA:   3'- cagUGGCGCuCGCGCCGG-------AGGU--GGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.