miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 11852 0.67 0.53261
Target:  5'- -gUUGGCCuGGgCGAaCCCcGCGCCa -3'
miRNA:   3'- gaAGCCGGuCCgGUUaGGGuUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 38658 0.67 0.511194
Target:  5'- uUUCGGCacgaccgAGGCUAcgUCCAgcggcgGCACCGa -3'
miRNA:   3'- gAAGCCGg------UCCGGUuaGGGU------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 41116 0.67 0.54344
Target:  5'- -gUCGGCCugguGGCCGucgCCCuggGCGCgGc -3'
miRNA:   3'- gaAGCCGGu---CCGGUua-GGGu--UGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 41219 0.67 0.511194
Target:  5'- -aUCGGCCaugaGGGCgGuuAUUCCAACAacCCGg -3'
miRNA:   3'- gaAGCCGG----UCCGgU--UAGGGUUGU--GGC- -5'
26496 5' -56.2 NC_005357.1 + 32570 0.67 0.511194
Target:  5'- --gCGcGCCGGuGCCAcgCUCAucgACGCCGa -3'
miRNA:   3'- gaaGC-CGGUC-CGGUuaGGGU---UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 34802 0.68 0.459354
Target:  5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3'
miRNA:   3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14402 0.68 0.438425
Target:  5'- uCUUCGGCgAcGCCGAcaugaucggcuucUUCCAGCGCCu -3'
miRNA:   3'- -GAAGCCGgUcCGGUU-------------AGGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 30586 0.68 0.44932
Target:  5'- gUUCGcCCAGGCCAA-CCgCGGCgcgGCCGg -3'
miRNA:   3'- gAAGCcGGUCCGGUUaGG-GUUG---UGGC- -5'
26496 5' -56.2 NC_005357.1 + 37622 0.68 0.44932
Target:  5'- --cCGGCCAG--CAAUCCCGcaGCGCCa -3'
miRNA:   3'- gaaGCCGGUCcgGUUAGGGU--UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 14134 0.68 0.456331
Target:  5'- -gUCGGCCAgcggcuugccuuccGGCCG-UUCCAGCGCg- -3'
miRNA:   3'- gaAGCCGGU--------------CCGGUuAGGGUUGUGgc -5'
26496 5' -56.2 NC_005357.1 + 29584 0.68 0.476679
Target:  5'- -gUCGGCCgcgcccaggcgcgcGGuuuGCCAGUugUCCAGCGCCGg -3'
miRNA:   3'- gaAGCCGG--------------UC---CGGUUA--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 17990 0.68 0.47977
Target:  5'- -gUC-GCCgAGGCCGcgCgCGGCACCGa -3'
miRNA:   3'- gaAGcCGG-UCCGGUuaGgGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 7697 0.68 0.439409
Target:  5'- --gCGGCCGGuaGCCcucgaaguGAUCCC-ACACCGc -3'
miRNA:   3'- gaaGCCGGUC--CGG--------UUAGGGuUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 34741 0.68 0.47977
Target:  5'- --cCGGCCgccgAGGUCAAgCCCGACgACCu -3'
miRNA:   3'- gaaGCCGG----UCCGGUUaGGGUUG-UGGc -5'
26496 5' -56.2 NC_005357.1 + 17833 0.68 0.439409
Target:  5'- -cUCGGgCGGGUUGAUgCCCGcCACCGu -3'
miRNA:   3'- gaAGCCgGUCCGGUUA-GGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13747 0.68 0.459354
Target:  5'- ---aGGUCGGGUUguuuuGUUCCAGCGCCGa -3'
miRNA:   3'- gaagCCGGUCCGGu----UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 37175 0.69 0.410444
Target:  5'- --aCGGU--GGCCGGUgCCAACGCCa -3'
miRNA:   3'- gaaGCCGguCCGGUUAgGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 9553 0.69 0.382696
Target:  5'- cCUUCcaGUCGGGCgcgaCAAUCUCGGCGCCGa -3'
miRNA:   3'- -GAAGc-CGGUCCG----GUUAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 37224 0.69 0.401056
Target:  5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3'
miRNA:   3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 8828 0.69 0.410444
Target:  5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3'
miRNA:   3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.