miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 29033 0.81 0.06878
Target:  5'- gCUUCGGCCAGGUCGAUaCCCAcCGgCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUA-GGGUuGUgGC- -5'
26496 5' -56.2 NC_005357.1 + 28957 0.75 0.181289
Target:  5'- -aUCGcCCAGGUCAugCCCGACACCGc -3'
miRNA:   3'- gaAGCcGGUCCGGUuaGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 28841 0.77 0.133454
Target:  5'- --gCGGCCGGacuuGCCGaagcuGUCCCAGCGCCGc -3'
miRNA:   3'- gaaGCCGGUC----CGGU-----UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 28356 0.66 0.598498
Target:  5'- uUUCuGGCacccUAGGCaacgacgCCCAGCGCCGg -3'
miRNA:   3'- gAAG-CCG----GUCCGguua---GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 27741 0.69 0.391806
Target:  5'- aCUgcaGGCCGGGCUucaagcgCUCAACACCc -3'
miRNA:   3'- -GAag-CCGGUCCGGuua----GGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 27436 0.69 0.429624
Target:  5'- -aUUGGCaacGCCAAUgCCGACGCCa -3'
miRNA:   3'- gaAGCCGgucCGGUUAgGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 27350 0.73 0.243701
Target:  5'- ---aGGCCGGGCCGAccUCgCAGCACuCGu -3'
miRNA:   3'- gaagCCGGUCCGGUU--AGgGUUGUG-GC- -5'
26496 5' -56.2 NC_005357.1 + 25915 0.69 0.429624
Target:  5'- -aUCGGCCAGaCCA---CCGGCACCu -3'
miRNA:   3'- gaAGCCGGUCcGGUuagGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 25722 0.66 0.609633
Target:  5'- --gCGGCgGGGUCGucGUCCU--CACCGg -3'
miRNA:   3'- gaaGCCGgUCCGGU--UAGGGuuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 25388 0.7 0.339304
Target:  5'- aUUCGGCCAagaaggugcGGCUcAUCCCGuuCACCu -3'
miRNA:   3'- gAAGCCGGU---------CCGGuUAGGGUu-GUGGc -5'
26496 5' -56.2 NC_005357.1 + 25338 0.67 0.53261
Target:  5'- ---aGGCCcGGCCGAgaaCCG-CGCCGg -3'
miRNA:   3'- gaagCCGGuCCGGUUag-GGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24720 0.76 0.149332
Target:  5'- -gUCGGUCGGGCCGcUUCCAccGCGCCu -3'
miRNA:   3'- gaAGCCGGUCCGGUuAGGGU--UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 24584 0.66 0.576325
Target:  5'- --aCGGUCGGGCCG--UCCGGCguguccuuGCCGg -3'
miRNA:   3'- gaaGCCGGUCCGGUuaGGGUUG--------UGGC- -5'
26496 5' -56.2 NC_005357.1 + 24176 0.67 0.54344
Target:  5'- -cUCGGCgCAGGUCGugaCCGGCAUCc -3'
miRNA:   3'- gaAGCCG-GUCCGGUuagGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 24142 0.66 0.609633
Target:  5'- --cCGGCUGcGcGCCuggCCCAGCGCCu -3'
miRNA:   3'- gaaGCCGGU-C-CGGuuaGGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 24057 0.71 0.299595
Target:  5'- -aUCGGCaAGGCCAAcCUCGcCGCCGg -3'
miRNA:   3'- gaAGCCGgUCCGGUUaGGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 23897 1.1 0.000476
Target:  5'- aCUUCGGCCAGGCCAAUCCCAACACCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 23852 0.69 0.391806
Target:  5'- --aCGGCCAGGCCGucaCCgCGAgcgcggccucCACCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GG-GUU----------GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 19973 0.66 0.609633
Target:  5'- uUUCGGgCAGGCCGccgauGUCCgCGuagaacuCGCCa -3'
miRNA:   3'- gAAGCCgGUCCGGU-----UAGG-GUu------GUGGc -5'
26496 5' -56.2 NC_005357.1 + 19781 0.67 0.53261
Target:  5'- uCUUCacugauuGCCAGGCCGG-CCCGguagaACACCc -3'
miRNA:   3'- -GAAGc------CGGUCCGGUUaGGGU-----UGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.