miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 19606 0.72 0.262893
Target:  5'- -gUCGGCagcgcggcgaaguCGGGCCAGUC-CGGCACCa -3'
miRNA:   3'- gaAGCCG-------------GUCCGGUUAGgGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 19210 0.69 0.401056
Target:  5'- --gUGGCCgAGGCCGAggCCGAauuCACCGa -3'
miRNA:   3'- gaaGCCGG-UCCGGUUagGGUU---GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 19126 0.66 0.551063
Target:  5'- --cCGGCCAGuGCCGGccgcaaacaggcauUCguggcgcacgCCGACACCGa -3'
miRNA:   3'- gaaGCCGGUC-CGGUU--------------AG----------GGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 18886 0.72 0.256809
Target:  5'- -gUCGGCCgAGGCCAucgaCCGcguGCGCCGc -3'
miRNA:   3'- gaAGCCGG-UCCGGUuag-GGU---UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 18422 0.66 0.59183
Target:  5'- -aUUGGCCGacgcgcccaccuucGCCAGUCUguGCGCCGa -3'
miRNA:   3'- gaAGCCGGUc-------------CGGUUAGGguUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 17990 0.68 0.47977
Target:  5'- -gUC-GCCgAGGCCGcgCgCGGCACCGa -3'
miRNA:   3'- gaAGcCGG-UCCGGUuaGgGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 17833 0.68 0.439409
Target:  5'- -cUCGGgCGGGUUGAUgCCCGcCACCGu -3'
miRNA:   3'- gaAGCCgGUCCGGUUA-GGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 17098 0.72 0.262893
Target:  5'- --cCGGCCuGGaCAAUCCCGgcgacgaGCGCCGg -3'
miRNA:   3'- gaaGCCGGuCCgGUUAGGGU-------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14830 0.7 0.364903
Target:  5'- cCUUCGcCCAGGUCGAUgCCGuuggcggccaGCGCCGc -3'
miRNA:   3'- -GAAGCcGGUCCGGUUAgGGU----------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14402 0.68 0.438425
Target:  5'- uCUUCGGCgAcGCCGAcaugaucggcuucUUCCAGCGCCu -3'
miRNA:   3'- -GAAGCCGgUcCGGUU-------------AGGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 14270 0.69 0.382696
Target:  5'- --aCGGCguGGUCGAUCUgAcCACCGg -3'
miRNA:   3'- gaaGCCGguCCGGUUAGGgUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14221 0.71 0.322975
Target:  5'- -gUCGGCguGGCCGA-CCUggacaaGGCGCCGc -3'
miRNA:   3'- gaAGCCGguCCGGUUaGGG------UUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14134 0.68 0.456331
Target:  5'- -gUCGGCCAgcggcuugccuuccGGCCG-UUCCAGCGCg- -3'
miRNA:   3'- gaAGCCGGU--------------CCGGUuAGGGUUGUGgc -5'
26496 5' -56.2 NC_005357.1 + 14099 0.74 0.186321
Target:  5'- ---aGGCCaAGGCCAucgagUCCGACGCCGa -3'
miRNA:   3'- gaagCCGG-UCCGGUua---GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13767 0.69 0.401056
Target:  5'- --cUGGCgAGGCCG---CCGGCACCGa -3'
miRNA:   3'- gaaGCCGgUCCGGUuagGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13747 0.68 0.459354
Target:  5'- ---aGGUCGGGUUguuuuGUUCCAGCGCCGa -3'
miRNA:   3'- gaagCCGGUCCGGu----UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13369 0.69 0.429624
Target:  5'- gCUUCuGGaaaUAGGCCAugCCCAGCGCgCGg -3'
miRNA:   3'- -GAAG-CCg--GUCCGGUuaGGGUUGUG-GC- -5'
26496 5' -56.2 NC_005357.1 + 13166 0.71 0.322975
Target:  5'- -gUCGGCCAgugucGGCCGcgCUgGGCGCCc -3'
miRNA:   3'- gaAGCCGGU-----CCGGUuaGGgUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 11852 0.67 0.53261
Target:  5'- -gUUGGCCuGGgCGAaCCCcGCGCCa -3'
miRNA:   3'- gaAGCCGGuCCgGUUaGGGuUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 10987 0.73 0.225088
Target:  5'- gUUCGGCCAGGCCGgAUUgCAugAgCGu -3'
miRNA:   3'- gAAGCCGGUCCGGU-UAGgGUugUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.