miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 17098 0.72 0.262893
Target:  5'- --cCGGCCuGGaCAAUCCCGgcgacgaGCGCCGg -3'
miRNA:   3'- gaaGCCGGuCCgGUUAGGGU-------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 18886 0.72 0.256809
Target:  5'- -gUCGGCCgAGGCCAucgaCCGcguGCGCCGc -3'
miRNA:   3'- gaAGCCGG-UCCGGUuag-GGU---UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 33345 0.73 0.237358
Target:  5'- --aCGGCCucgcGGCCAGUgaggggaugcacCCCGAUACCGu -3'
miRNA:   3'- gaaGCCGGu---CCGGUUA------------GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 719 0.74 0.20216
Target:  5'- -gUCGGCCAcGGCCAAgUCgAGCGCCu -3'
miRNA:   3'- gaAGCCGGU-CCGGUUaGGgUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 14099 0.74 0.186321
Target:  5'- ---aGGCCaAGGCCAucgagUCCGACGCCGa -3'
miRNA:   3'- gaagCCGG-UCCGGUua---GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 28957 0.75 0.181289
Target:  5'- -aUCGcCCAGGUCAugCCCGACACCGc -3'
miRNA:   3'- gaAGCcGGUCCGGUuaGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 31145 0.75 0.16691
Target:  5'- uUUCcGCCuaccuGGCCGagcGUCCCAGCGCCGc -3'
miRNA:   3'- gAAGcCGGu----CCGGU---UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24057 0.71 0.299595
Target:  5'- -aUCGGCaAGGCCAAcCUCGcCGCCGg -3'
miRNA:   3'- gaAGCCGgUCCGGUUaGGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14221 0.71 0.322975
Target:  5'- -gUCGGCguGGCCGA-CCUggacaaGGCGCCGc -3'
miRNA:   3'- gaAGCCGguCCGGUUaGGG------UUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 8882 0.7 0.331065
Target:  5'- gUUCGGCCuuGGC--GUCCCAcCACUGg -3'
miRNA:   3'- gAAGCCGGu-CCGguUAGGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 19210 0.69 0.401056
Target:  5'- --gUGGCCgAGGCCGAggCCGAauuCACCGa -3'
miRNA:   3'- gaaGCCGG-UCCGGUUagGGUU---GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13767 0.69 0.401056
Target:  5'- --cUGGCgAGGCCG---CCGGCACCGa -3'
miRNA:   3'- gaaGCCGgUCCGGUuagGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 23852 0.69 0.391806
Target:  5'- --aCGGCCAGGCCGucaCCgCGAgcgcggccucCACCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GG-GUU----------GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 27741 0.69 0.391806
Target:  5'- aCUgcaGGCCGGGCUucaagcgCUCAACACCc -3'
miRNA:   3'- -GAag-CCGGUCCGGuua----GGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 9553 0.69 0.382696
Target:  5'- cCUUCcaGUCGGGCgcgaCAAUCUCGGCGCCGa -3'
miRNA:   3'- -GAAGc-CGGUCCG----GUUAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14270 0.69 0.382696
Target:  5'- --aCGGCguGGUCGAUCUgAcCACCGg -3'
miRNA:   3'- gaaGCCGguCCGGUUAGGgUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4798 0.69 0.382696
Target:  5'- gCUUUGGCgUAGGCCAgcuuguagagGUCggggCCGGCGCCGu -3'
miRNA:   3'- -GAAGCCG-GUCCGGU----------UAG----GGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 25388 0.7 0.339304
Target:  5'- aUUCGGCCAagaaggugcGGCUcAUCCCGuuCACCu -3'
miRNA:   3'- gAAGCCGGU---------CCGGuUAGGGUu-GUGGc -5'
26496 5' -56.2 NC_005357.1 + 23897 1.1 0.000476
Target:  5'- aCUUCGGCCAGGCCAAUCCCAACACCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUAGGGUUGUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.