miRNA display CGI


Results 61 - 79 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 17833 0.68 0.439409
Target:  5'- -cUCGGgCGGGUUGAUgCCCGcCACCGu -3'
miRNA:   3'- gaAGCCgGUCCGGUUA-GGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 25722 0.66 0.609633
Target:  5'- --gCGGCgGGGUCGucGUCCU--CACCGg -3'
miRNA:   3'- gaaGCCGgUCCGGU--UAGGGuuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24142 0.66 0.609633
Target:  5'- --cCGGCUGcGcGCCuggCCCAGCGCCu -3'
miRNA:   3'- gaaGCCGGU-C-CGGuuaGGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 3780 0.66 0.609633
Target:  5'- -cUCGGUCGuGCCGAaagCCAGCGCCu -3'
miRNA:   3'- gaAGCCGGUcCGGUUag-GGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 19973 0.66 0.609633
Target:  5'- uUUCGGgCAGGCCGccgauGUCCgCGuagaacuCGCCa -3'
miRNA:   3'- gAAGCCgGUCCGGU-----UAGG-GUu------GUGGc -5'
26496 5' -56.2 NC_005357.1 + 9546 0.66 0.598498
Target:  5'- gUUCGGCCAGuG-CGAUCUgcuCGCCGg -3'
miRNA:   3'- gAAGCCGGUC-CgGUUAGGguuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24584 0.66 0.576325
Target:  5'- --aCGGUCGGGCCG--UCCGGCguguccuuGCCGg -3'
miRNA:   3'- gaaGCCGGUCCGGUuaGGGUUG--------UGGC- -5'
26496 5' -56.2 NC_005357.1 + 9791 0.66 0.598498
Target:  5'- --gCGGCCAGGUCGcgC---ACGCCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUuaGgguUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4751 0.66 0.57191
Target:  5'- -cUCGGCCAcGGCCGcgauguucucggcGUucgcccacacugcgCCCAgcACGCCGg -3'
miRNA:   3'- gaAGCCGGU-CCGGU-------------UA--------------GGGU--UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 1195 0.66 0.565305
Target:  5'- -gUCGGCCGGGuuguuggaauaaCCGccCUCAugGCCGa -3'
miRNA:   3'- gaAGCCGGUCC------------GGUuaGGGUugUGGC- -5'
26496 5' -56.2 NC_005357.1 + 40660 0.66 0.558719
Target:  5'- -aUCGGCCcgacgcgccaggcgcAGGCCGG--CCAugACCGc -3'
miRNA:   3'- gaAGCCGG---------------UCCGGUUagGGUugUGGC- -5'
26496 5' -56.2 NC_005357.1 + 11852 0.67 0.53261
Target:  5'- -gUUGGCCuGGgCGAaCCCcGCGCCa -3'
miRNA:   3'- gaAGCCGGuCCgGUUaGGGuUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 19781 0.67 0.53261
Target:  5'- uCUUCacugauuGCCAGGCCGG-CCCGguagaACACCc -3'
miRNA:   3'- -GAAGc------CGGUCCGGUUaGGGU-----UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 34741 0.68 0.47977
Target:  5'- --cCGGCCgccgAGGUCAAgCCCGACgACCu -3'
miRNA:   3'- gaaGCCGG----UCCGGUUaGGGUUG-UGGc -5'
26496 5' -56.2 NC_005357.1 + 29584 0.68 0.476679
Target:  5'- -gUCGGCCgcgcccaggcgcgcGGuuuGCCAGUugUCCAGCGCCGg -3'
miRNA:   3'- gaAGCCGG--------------UC---CGGUUA--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13747 0.68 0.459354
Target:  5'- ---aGGUCGGGUUguuuuGUUCCAGCGCCGa -3'
miRNA:   3'- gaagCCGGUCCGGu----UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 34802 0.68 0.459354
Target:  5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3'
miRNA:   3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14134 0.68 0.456331
Target:  5'- -gUCGGCCAgcggcuugccuuccGGCCG-UUCCAGCGCg- -3'
miRNA:   3'- gaAGCCGGU--------------CCGGUuAGGGUUGUGgc -5'
26496 5' -56.2 NC_005357.1 + 29033 0.81 0.06878
Target:  5'- gCUUCGGCCAGGUCGAUaCCCAcCGgCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUA-GGGUuGUgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.