miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 19781 0.67 0.53261
Target:  5'- uCUUCacugauuGCCAGGCCGG-CCCGguagaACACCc -3'
miRNA:   3'- -GAAGc------CGGUCCGGUUaGGGU-----UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 32570 0.67 0.511194
Target:  5'- --gCGcGCCGGuGCCAcgCUCAucgACGCCGa -3'
miRNA:   3'- gaaGC-CGGUC-CGGUuaGGGU---UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 41219 0.67 0.511194
Target:  5'- -aUCGGCCaugaGGGCgGuuAUUCCAACAacCCGg -3'
miRNA:   3'- gaAGCCGG----UCCGgU--UAGGGUUGU--GGC- -5'
26496 5' -56.2 NC_005357.1 + 38658 0.67 0.511194
Target:  5'- uUUCGGCacgaccgAGGCUAcgUCCAgcggcgGCACCGa -3'
miRNA:   3'- gAAGCCGg------UCCGGUuaGGGU------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 8120 0.67 0.50062
Target:  5'- -cUCGGCCAuuucGGCgGugacuUCCCAGCccuuGCCGu -3'
miRNA:   3'- gaAGCCGGU----CCGgUu----AGGGUUG----UGGC- -5'
26496 5' -56.2 NC_005357.1 + 34741 0.68 0.47977
Target:  5'- --cCGGCCgccgAGGUCAAgCCCGACgACCu -3'
miRNA:   3'- gaaGCCGG----UCCGGUUaGGGUUG-UGGc -5'
26496 5' -56.2 NC_005357.1 + 17990 0.68 0.47977
Target:  5'- -gUC-GCCgAGGCCGcgCgCGGCACCGa -3'
miRNA:   3'- gaAGcCGG-UCCGGUuaGgGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 29584 0.68 0.476679
Target:  5'- -gUCGGCCgcgcccaggcgcgcGGuuuGCCAGUugUCCAGCGCCGg -3'
miRNA:   3'- gaAGCCGG--------------UC---CGGUUA--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13747 0.68 0.459354
Target:  5'- ---aGGUCGGGUUguuuuGUUCCAGCGCCGa -3'
miRNA:   3'- gaagCCGGUCCGGu----UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 34802 0.68 0.459354
Target:  5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3'
miRNA:   3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14134 0.68 0.456331
Target:  5'- -gUCGGCCAgcggcuugccuuccGGCCG-UUCCAGCGCg- -3'
miRNA:   3'- gaAGCCGGU--------------CCGGUuAGGGUUGUGgc -5'
26496 5' -56.2 NC_005357.1 + 30586 0.68 0.44932
Target:  5'- gUUCGcCCAGGCCAA-CCgCGGCgcgGCCGg -3'
miRNA:   3'- gAAGCcGGUCCGGUUaGG-GUUG---UGGC- -5'
26496 5' -56.2 NC_005357.1 + 37622 0.68 0.44932
Target:  5'- --cCGGCCAG--CAAUCCCGcaGCGCCa -3'
miRNA:   3'- gaaGCCGGUCcgGUUAGGGU--UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 17833 0.68 0.439409
Target:  5'- -cUCGGgCGGGUUGAUgCCCGcCACCGu -3'
miRNA:   3'- gaAGCCgGUCCGGUUA-GGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 7697 0.68 0.439409
Target:  5'- --gCGGCCGGuaGCCcucgaaguGAUCCC-ACACCGc -3'
miRNA:   3'- gaaGCCGGUC--CGG--------UUAGGGuUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14402 0.68 0.438425
Target:  5'- uCUUCGGCgAcGCCGAcaugaucggcuucUUCCAGCGCCu -3'
miRNA:   3'- -GAAGCCGgUcCGGUU-------------AGGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 33733 0.69 0.429624
Target:  5'- --cCGaCCcGGCCAGUacaCCAACGCCGa -3'
miRNA:   3'- gaaGCcGGuCCGGUUAg--GGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 25915 0.69 0.429624
Target:  5'- -aUCGGCCAGaCCA---CCGGCACCu -3'
miRNA:   3'- gaAGCCGGUCcGGUuagGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 27436 0.69 0.429624
Target:  5'- -aUUGGCaacGCCAAUgCCGACGCCa -3'
miRNA:   3'- gaAGCCGgucCGGUUAgGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 13369 0.69 0.429624
Target:  5'- gCUUCuGGaaaUAGGCCAugCCCAGCGCgCGg -3'
miRNA:   3'- -GAAG-CCg--GUCCGGUuaGGGUUGUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.