Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 7168 | 0.66 | 0.481661 |
Target: 5'- aGGGCCGGGCgcuugucggauUCGGG-GGCgACGCUGg -3' miRNA: 3'- aCUUGGUCUG-----------GGUCCgCUGgUGCGAC- -5' |
|||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 29010 | 0.66 | 0.491965 |
Target: 5'- cGAcgUAGGCgaCCAGGCG-CCGCGCUu -3' miRNA: 3'- aCUugGUCUG--GGUCCGCuGGUGCGAc -5' |
|||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 24964 | 0.66 | 0.491965 |
Target: 5'- -cGugCAGGCCCuGGCGuggcACCugGCc- -3' miRNA: 3'- acUugGUCUGGGuCCGC----UGGugCGac -5' |
|||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 7691 | 0.66 | 0.491965 |
Target: 5'- cGGGCUuGACCUcGGCGGCCG-GCUu -3' miRNA: 3'- aCUUGGuCUGGGuCCGCUGGUgCGAc -5' |
|||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 2725 | 0.66 | 0.50237 |
Target: 5'- -uGGCCGGACgCUugAGcGCGGCCcgGCGCUGc -3' miRNA: 3'- acUUGGUCUG-GG--UC-CGCUGG--UGCGAC- -5' |
|||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 10066 | 0.66 | 0.50237 |
Target: 5'- -cGGCCGGGgCCucggcGGCGACCGCaGCg- -3' miRNA: 3'- acUUGGUCUgGGu----CCGCUGGUG-CGac -5' |
|||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 16800 | 0.66 | 0.50237 |
Target: 5'- cGAGgUGGACgCGcugcuGGCGACCGCGCc- -3' miRNA: 3'- aCUUgGUCUGgGU-----CCGCUGGUGCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home